If each state emits a fixed number of symbols then you can just do an HMM where the emissions are over alpha^length. If you want the symbols to overlap then use an order-n distribution.
Matthew On Wednesday 11 January 2006 09:37, wendy wong wrote: > what I mean by Generalized HMM is that each state emits a sequence of > symbols (fixed length though), which doesn't seen very straight > forward in biojava? > > thanks, > wendy > > On 1/11/06, [EMAIL PROTECTED] <[EMAIL PROTECTED]> wrote: > > Depending on what you mean by generalized.... > > > > You can create lots of custom HMM architechtures using the DP packages of > > biojava. > > > > - Mark > > > > > > > > > > > > wendy wong <[EMAIL PROTECTED]> > > Sent by: [EMAIL PROTECTED] > > 01/11/2006 05:00 AM > > Please respond to sww8 > > > > > > To: biojava-l@biojava.org > > cc: (bcc: Mark Schreiber/GP/Novartis) > > Subject: [Biojava-l] Generalized HMM in biojava? > > > > > > Hi, > > > > I was wondering if it is possible to use the biojava library to > > construct a generalized HMM? > > > > thanks, > > Wendy > > > > _______________________________________________ > > Biojava-l mailing list - Biojava-l@biojava.org > > http://biojava.org/mailman/listinfo/biojava-l > > _______________________________________________ > Biojava-l mailing list - Biojava-l@biojava.org > http://biojava.org/mailman/listinfo/biojava-l _______________________________________________ Biojava-l mailing list - Biojava-l@biojava.org http://biojava.org/mailman/listinfo/biojava-l
