Thanks for pointing these out. Corrected now in CVS.
The use of name parameters ( namespace= :nsp) is prefered (and the previous
syntax was incorrect). As you point out,
set version is a private method so you cannot access it (even in Hibernate
which does some pretty odd things) so I changed this to you setDescription
suggestion.
- Mark
Felix Dreher <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
02/24/2006 08:53 PM
To: [email protected]
cc: (bcc: Mark Schreiber/GP/Novartis)
Subject: [Biojava-l] BioJavaX docbook minor corrections
Hello,
just two suggestions/corrections about the BioJavaX-docbook.
In the section "Configuring your application to use Hibernate and BioSQL",
complete example,
I found two errors (or at least these parts don't work in my test-app).
1)
// print out all the sequences in the namespace
Query sq = session.createQuery("from BioEntry where
namespace=?",ns);
--> should probably be:
Query sq = session.createQuery("from BioEntry where
namespace=:nsp");
sq.setParameter("nsp",ns);
2)
// if the sequence is called bloggs, change its version to 99
be.setVersion(99);
--> can't use the method setVersion(int) --> but e.g.
setDescription("XYZ");
Regards,
Felix
--
Felix Dreher
Max-Planck-Institute for Infection Biology
Campus Charité Mitte
Department of Immunology
Mailing address: Schumannstraße 21/22
Visitors: Virchowweg 12
10117 Berlin
Germany
Tel.: +49 (0)30 28460-254 / -494
Mobile: +49 (0)163 7542426
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