The tutorial contains a section on how to calculate contacts between atoms of a structure: https://github.com/biojava/biojava-tutorial/blob/master/structure/contact-map.md
Let us know if you have any troubles with that or other specific questions. Jose On Tue, 12 Dec 2023 at 07:03, Enrico Morelli <more...@cerm.unifi.it> wrote: > Dear, > > is there a way to get all the atoms that fall within 3.0A from a given > atom (e.g. Zn) in the PDB. > > > Thanks > -- > ----------------------------------------------------------- > Enrico Morelli > System Administrator | Programmer | Web Developer > > CERM - Polo Scientifico > via Sacconi, 6 - 50019 Sesto Fiorentino (FI) - ITALY > ------------------------------------------------------------ > _______________________________________________ > Biojava-l mailing list - Biojava-l@biojava.org > https://mailman.open-bio.org/mailman/listinfo/biojava-l >
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