thanks! i only need one head so BaumWelchSampler works fine with me. The default SCORETYPE is probability and when I tried it the score goes back and forth, like + for one time and - for the next time. I then changed it to LOGODDS and recompiled biojava and now that the score is steadily increasing. I was wondering if the SCORETYPE could be passed in as an argument in the next version of biojava?
thanks, wendy On 30 May 2006 12:19:15 +0100, David Huen <[EMAIL PROTECTED]> wrote: > On May 30 2006, wendy wong wrote: > > >Hi, > > > >I was wondering if viterbi training is implemented in biojava, or if > >there's any open source version implemented using biojava? > > > There is one-head viterbi training already I think. The training framework > doesn't work for two-head - I wrote a viterbi training API that works for > two head but it is not fully compatible with the existing API so I never > put it into CVS, plus it doesn't have Baum-Welch implemented either. > > If it is any use to you you can have it. > > Regards, > David > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
