I just got a bounce response for this message. So I'm trying again in case you didn't get it the first time...
cheers, Richard On Wed, 2006-05-31 at 09:49 +0100, Richard Holland wrote: > I've modified BaumWelchSampler in CVS so that it accepts alternative > score types as an additional parameter to singleSequenceIterator(). > > cheers, > Richard. > > > On Tue, 2006-05-30 at 16:43 +0100, wendy wong wrote: > > thanks! i only need one head so BaumWelchSampler works fine with me. > > The default SCORETYPE is probability and when I tried it the score > > goes back and forth, like + for one time and - for the next time. I > > then changed it to LOGODDS and recompiled biojava and now that the > > score is steadily increasing. I was wondering if the SCORETYPE could > > be passed in as an argument in the next version of biojava? > > > > thanks, > > wendy > > > > > > On 30 May 2006 12:19:15 +0100, David Huen <[EMAIL PROTECTED]> wrote: > > > On May 30 2006, wendy wong wrote: > > > > > > >Hi, > > > > > > > >I was wondering if viterbi training is implemented in biojava, or if > > > >there's any open source version implemented using biojava? > > > > > > > There is one-head viterbi training already I think. The training framework > > > doesn't work for two-head - I wrote a viterbi training API that works for > > > two head but it is not fully compatible with the existing API so I never > > > put it into CVS, plus it doesn't have Baum-Welch implemented either. > > > > > > If it is any use to you you can have it. > > > > > > Regards, > > > David > > > > > _______________________________________________ > > Biojava-l mailing list - [email protected] > > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- Richard Holland (BioMart Team) EMBL-EBI Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD UNITED KINGDOM Tel: +44-(0)1223-494416 _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
