Hi, I am trying to modify the BioJava cookbook example 'BlastParser' to process output from a Blast search. I get the following exception when I run this with the output I have from the EBI web services NCBIBlast tool. org.xml.sax.SAXException: Program ncbi-blastp Version 2.2.15 is not supported by the biojava blast-like parsing framework at org.biojava.bio.program.sax.BlastLikeSaxParser.interpret (BlastLikeSaxParser.java:241) at org.biojava.bio.program.sax.BlastLikeSaxParser.parse (BlastLikeSaxParser.java:160)
Also, are there BioJava tools to process the xml output rather than the raw Blast output? many thanks, Susy -- ********************************************************* Dr S.L. Griffiths YSBL Department of Chemistry University of York Heslington York YO10 5YW UK http://www.pims-lims.org/ email: [EMAIL PROTECTED] Tel. +44 (0)1904 328270 Fax +44 (0)1904 328266 ********************************************************* _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
