biojava-l  

Messages by Date

• 2007/07/12 [Biojava-l] ACE parser Warren, Jonathan
• 2007/07/10 Re: [Biojava-l] Problem with SearchProfile demo Mark Schreiber
• 2007/07/10 Re: [Biojava-l] Problem with SearchProfile demo Aulia Rahma Amin
• 2007/07/09 Re: [Biojava-l] Problem with SearchProfile demo Mark Schreiber
• 2007/07/09 Re: [Biojava-l] Problem with SearchProfile demo Aulia Rahma Amin
• 2007/07/09 Re: [Biojava-l] Problem with SearchProfile demo Mark Schreiber
• 2007/07/09 [Biojava-l] Problem with SearchProfile demo Aulia Rahma Amin
• 2007/07/09 Re: [Biojava-l] How to read and write a ProfileHMM into file Mark Schreiber
• 2007/07/09 Re: [Biojava-l] How to read and write a ProfileHMM into file Richard Holland
• 2007/07/09 [Biojava-l] How to read and write a ProfileHMM into file Aulia Rahma Amin
• 2007/07/05 Re: [Biojava-l] [Biojava-dev] Request for help! Richard Holland
• 2007/07/04 Re: [Biojava-l] [Biojava-dev] Request for help! Mark Schreiber
• 2007/07/04 Re: [Biojava-l] [Biojava-dev] Request for help! Richard Holland
• 2007/07/04 Re: [Biojava-l] Request for help! Richard Holland
• 2007/07/04 Re: [Biojava-l] [Biojava-dev] Request for help! Andy Yates
• 2007/07/04 Re: [Biojava-l] Request for help! Mark Schreiber
• 2007/07/04 Re: [Biojava-l] Request for help! Hilmar Lapp
• 2007/07/04 [Biojava-l] Request for help! Richard Holland
• 2007/07/03 [Biojava-l] Fwd: biojava error Kavita Agarwal
• 2007/07/03 [Biojava-l] Fwd: biojava error Kavita Agarwal
• 2007/07/01 [Biojava-l] Where can I find the demo of using svm in biojava? zt_2003
• 2007/06/29 [Biojava-l] biojava digital signature Andreas Prlic
• 2007/06/29 Re: [Biojava-l] biojava error Andreas Prlic
• 2007/06/29 Re: [Biojava-l] biojava error Mark Schreiber
• 2007/06/29 Re: [Biojava-l] biojava error Andy Yates
• 2007/06/28 Re: [Biojava-l] biojava error Mark Schreiber
• 2007/06/28 Re: [Biojava-l] biojava error Andreas Prlic
• 2007/06/28 Re: [Biojava-l] biojava error Richard Holland
• 2007/06/28 [Biojava-l] biojava error Kavita Agarwal
• 2007/06/28 Re: [Biojava-l] problem in initialising DNATools Richard Holland
• 2007/06/28 [Biojava-l] problem in initialising DNATools Kavita Agarwal
• 2007/06/25 Re: [Biojava-l] Pattern matching mark . schreiber
• 2007/06/25 [Biojava-l] Pattern matching Jerome LANE
• 2007/06/25 [Biojava-l] Pattern Jerome LANE
• 2007/06/15 Re: [Biojava-l] NCBISequenceDB getSequence failed Richard Holland
• 2007/06/15 Re: [Biojava-l] get Sequence by GeneID Richard Holland
• 2007/06/15 [Biojava-l] get Sequence by GeneID Christian Köberle
• 2007/06/15 [Biojava-l] NCBISequenceDB getSequence failed Christian Köberle
• 2007/06/13 [Biojava-l] BioJava 1.5 Released Richard Holland
• 2007/06/11 Re: [Biojava-l] Blast parser mark . schreiber
• 2007/06/11 [Biojava-l] Blast parser Susy Griffiths
• 2007/06/08 Re: [Biojava-l] question about pdb reader Andreas Prlic
• 2007/06/07 [Biojava-l] Biojava 1.5 beta3 Released Mark Schreiber
• 2007/06/07 [Biojava-l] question about pdb reader Jun Gao
• 2007/06/06 Re: [Biojava-l] Extracting information from Genbank Orest Kozyar
• 2007/06/06 [Biojava-l] Extracting information from Genbank Orest Kozyar
• 2007/06/06 Re: [Biojava-l] question about pdb x-ray information Andreas Prlic
• 2007/06/05 Re: [Biojava-l] question about pdb x-ray information Andreas Prlic
• 2007/06/05 [Biojava-l] question about pdb x-ray information Jun Gao
• 2007/05/31 Re: [Biojava-l] Query Ola Spjuth
• 2007/05/31 Re: [Biojava-l] Query Tom Oinn
• 2007/05/31 [Biojava-l] Query rohit reja
• 2007/05/30 Re: [Biojava-l] KEGG Interface Christian Köberle
• 2007/05/28 Re: [Biojava-l] Secondary Structure data from PDB file Andreas Prlic
• 2007/05/25 [Biojava-l] Secondary Structure data from PDB file Andrew Walsh
• 2007/05/25 Re: [Biojava-l] KEGG Interface Mark Schreiber
• 2007/05/25 [Biojava-l] KEGG Interface Christian Köberle
• 2007/05/22 Re: [Biojava-l] [HMM] detecting several instances of the same motif fails Mark Schreiber
• 2007/05/22 [Biojava-l] [HMM] detecting several instances of the same motif fails Evert-Jan Blom
• 2007/05/21 [Biojava-l] Another Project Contributor? T. Thomas Cheng
• 2007/05/20 Re: [Biojava-l] how to set the “token” para meter? mark . schreiber
• 2007/05/20 [Biojava-l] how to set the “token” parameter? zt_2003
• 2007/05/16 Re: [Biojava-l] [Biojava-dev] Project Contribution. Mark Schreiber
• 2007/05/09 Re: [Biojava-l] Generate Graphics with BioJava Mark Schreiber
• 2007/05/08 Re: [Biojava-l] ABIFParser question Mark Schreiber
• 2007/05/08 Re: [Biojava-l] query Mark Schreiber
• 2007/05/08 Re: [Biojava-l] query Mark Schreiber
• 2007/05/07 [Biojava-l] Generate Graphics with BioJava Bernhard Heinzel
• 2007/05/03 [Biojava-l] query rohit reja
• 2007/05/03 [Biojava-l] query rohit reja
• 2007/05/02 [Biojava-l] ABIFParser question Heather Kent
• 2007/05/01 [Biojava-l] query rohit reja
• 2007/04/30 [Biojava-l] Ensembl Transcript ID Christian Köberle
• 2007/04/24 Re: [Biojava-l] Biojavax and hibernate problems Zagato
• 2007/04/20 Re: [Biojava-l] Biojavax and hibernate problems Zagato
• 2007/04/20 [Biojava-l] Biojavax and hibernate problems bertrand beckert
• 2007/04/18 Re: [Biojava-l] Biojava MassCalc george waldon
• 2007/04/12 Re: [Biojava-l] Question on FlexibleAlignment Eric Haugen
• 2007/04/11 [Biojava-l] Question on FlexibleAlignment Russ Kepler
• 2007/04/02 Re: [Biojava-l] Calculate mass and pI for a protein containingambiguity symbols george waldon
• 2007/04/02 Re: [Biojava-l] Calculate mass and pI for a protein containing ambiguity symbols Mark Schreiber
• 2007/04/02 [Biojava-l] Calculate mass and pI for a protein containing ambiguity symbols Susy Griffiths
• 2007/03/28 Re: [Biojava-l] RichSequence.IOTools Kaur Jaanson
• 2007/03/26 Re: [Biojava-l] RichSequence.IOTools Mark Schreiber
• 2007/03/26 Re: [Biojava-l] biojava/biojavax Mark Schreiber
• 2007/03/26 Re: [Biojava-l] RichSequence.IOTools Zagato
• 2007/03/26 [Biojava-l] RichSequence.IOTools Kaur Jaanson
• 2007/03/26 [Biojava-l] biojava/biojavax Sofia Burvall
• 2007/03/23 Re: [Biojava-l] State of the nation Egon Willighagen
• 2007/03/22 Re: [Biojava-l] State of the nation Mark Fortner
• 2007/03/21 Re: [Biojava-l] Uniprot files george waldon
• 2007/03/20 [Biojava-l] State of the nation mark . schreiber
• 2007/03/19 [Biojava-l] Joseph Bedell is out of the office. Joseph Bedell
• 2007/03/19 Re: [Biojava-l] BioJava 1.5 versus BioJava 2 Eric Gibert
• 2007/03/18 [Biojava-l] Phyloinformatics Summer of Code Hilmar Lapp
• 2007/03/16 Re: [Biojava-l] BioJava 1.5 versus BioJava 2 Mark Schreiber
• 2007/03/16 [Biojava-l] BioJava 1.5 versus BioJava 2 Eric Gibert
• 2007/03/16 [Biojava-l] Uniprot files Sofia Burvall
• 2007/03/14 Re: [Biojava-l] Having problems using biojava regex. mark . schreiber
• 2007/03/14 Re: [Biojava-l] Having problems using biojava regex. Charles Danko
• 2007/03/14 Re: [Biojava-l] Having problems using biojava regex. Mark Schreiber
• 2007/03/14 [Biojava-l] Having problems using biojava regex. Charles Danko
• 2007/03/11 Re: [Biojava-l] Ambiguity consensus string search Michael Heuer
• 2007/03/11 [Biojava-l] Ambiguity consensus string search Charles Danko
• 2007/03/05 [Biojava-l] Biojava plugin Dr. Christoph Gille
• 2007/03/03 Re: [Biojava-l] [Bioperl-l] New Article on Approaches to Web Development for Bioinformatics Alex Amies
• 2007/03/03 Re: [Biojava-l] [Bioperl-l] New Article on Approaches to Web Development for Bioinformatics Mauricio Herrera Cuadra
• 2007/03/02 Re: [Biojava-l] [BioJava] New Article Approaches to Web Development for Bioinformatics Mark Schreiber
• 2007/03/02 [Biojava-l] [BioJava] New Article Approaches to Web Development for Bioinformatics Alex Amies
• 2007/03/02 Re: [Biojava-l] (pre-Singapore) BioSQL ??? Zagato
• 2007/03/01 Re: [Biojava-l] (pre-Singapore) BioSQL ??? mark . schreiber
• 2007/03/01 [Biojava-l] (pre-Singapore) BioSQL ??? Zagato
• 2007/02/28 Re: [Biojava-l] biojava.utils.bytecode Mark Schreiber
• 2007/02/28 Re: [Biojava-l] case-sensitive sequences ilhami visne
• 2007/02/28 [Biojava-l] biojava.utils.bytecode Alain Favre
• 2007/02/28 Re: [Biojava-l] case-sensitive sequences Mark Schreiber
• 2007/02/27 Re: [Biojava-l] case-sensitive sequences Ilhami Visne
• 2007/02/27 Re: [Biojava-l] case-sensitive sequences ilhami visne
• 2007/02/27 Re: [Biojava-l] case-sensitive sequences Mark Schreiber
• 2007/02/27 Re: [Biojava-l] case-sensitive sequences ilhami visne
• 2007/02/27 [Biojava-l] case-sensitive sequences Ilhami Visne
• 2007/02/24 [Biojava-l] [ANN]VTD-XML 2.0 Jimmy Zhang
• 2007/02/21 [Biojava-l] Job opportunity - Bioinformatics Software Developer Sanjay Kumar
• 2007/02/20 [Biojava-l] Final Call for Papers NETTAB 2007 Paolo Romano
• 2007/02/14 [Biojava-l] Conversion Applied Bioisystems MALDI Voyager DE-STR .dat file into peak list Mark Titulaer
• 2007/02/12 [Biojava-l] Tokenization Salman Tahir
• 2007/02/11 [Biojava-l] New Zealand bioinformatician vacancy Smithies, Russell
• 2007/02/07 Re: [Biojava-l] Use Of Blosum62 Andreas Dräger
• 2007/02/07 Re: [Biojava-l] Use Of Blosum62 Saif Ur-Rehman
• 2007/02/07 [Biojava-l] Use Of Blosum62 Saif Ur-Rehman
• 2007/02/07 Re: [Biojava-l] Variable modifications to Protein sequences Mark Schreiber
• 2007/02/06 [Biojava-l] Variable modifications to Protein sequences Salman Tahir
• 2007/01/28 [Biojava-l] HMM Andreas Draeger
• 2007/01/15 [Biojava-l] IntegerAlphabet, creating Symbols Tilman Sauer
• 2006/12/29 [Biojava-l] Biojava 1.5 beta2 Released Mark Schreiber
• 2006/12/23 Re: [Biojava-l] High Order HMM Mark Schreiber
• 2006/12/22 [Biojava-l] High Order HMM Denis Yuen
• 2006/12/12 Re: [Biojava-l] Restriction Mapper - Thread (or dual core cpu) problem mark . schreiber
• 2006/12/12 [Biojava-l] Restriction Mapper - Thread (or dual core cpu) problem ilhami visne
• 2006/12/01 Re: [Biojava-l] [Biojava-dev] Willing to Contribute in BioJava Mark Schreiber
• 2006/12/01 [Biojava-l] Willing to Contribute in BioJava Sulaman Nawaz
• 2006/11/27 Re: [Biojava-l] Using REstriction Mapper mark . schreiber
• 2006/11/27 [Biojava-l] Using REstriction Mapper ashish mittal
• 2006/11/27 [Biojava-l] Looking forward for suggestions Ammad Ud Din
• 2006/11/24 [Biojava-l] Query to blast.. on Internet. Karl Harvey
• 2006/11/24 Re: [Biojava-l] A problem parsing Blast XML output (blastN vs. blastP) Benoit VARVENNE
• 2006/11/24 Re: [Biojava-l] A problem parsing Blast XML output (blastN vs. blastP) David Huen
• 2006/11/24 [Biojava-l] A problem parsing Blast XML output (blastN vs. blastP) Benoit VARVENNE
• 2006/11/23 [Biojava-l] Looking For Project Sulaman Malik
• 2006/11/21 [Biojava-l] Open JDK Mark Schreiber
• 2006/11/18 [Biojava-l] Fellowships for Junior Scientists Remo Sanges
• 2006/11/17 [Biojava-l] New To BioJava.org, right in the question. Dunarel Badescu
• 2006/11/13 Re: [Biojava-l] Any memory-optimised blast parser available ?[Scanned] Jolyon Holdstock
• 2006/11/13 Re: [Biojava-l] Any memory-optimised blast parser available ? Benoit VARVENNE
• 2006/11/13 Re: [Biojava-l] Any memory-optimised blast parser available ? Andy Yates
• 2006/11/13 [Biojava-l] Any memory-optimised blast parser available ? Benoit VARVENNE
• 2006/11/08 Re: [Biojava-l] New To BioJava.org mark . schreiber
• 2006/11/08 [Biojava-l] New To BioJava.org Ammad Ud Din
• 2006/11/08 Re: [Biojava-l] reading paptides from a fasta file Felix Dreher
• 2006/11/08 [Biojava-l] reading paptides from a fasta file Gerster Sarah
• 2006/11/07 Re: [Biojava-l] BioSQL -> BioJava Hibernate -> RichSequence access to primary keys mark . schreiber
• 2006/11/06 Re: [Biojava-l] BioSQL -> BioJava Hibernate -> RichSequence access to primary keys Seth Johnson
• 2006/11/06 Re: [Biojava-l] Parsing blast results Benoit VARVENNE
• 2006/11/06 [Biojava-l] Parsing blast results Benoit VARVENNE
• 2006/11/03 [Biojava-l] BioSQL -> BioJava Hibernate -> RichSequence access to primary keys Seth Johnson
• 2006/11/02 Re: [Biojava-l] Using Java to create BLAST searches Graham Etherington
• 2006/11/02 [Biojava-l] Reading sequence identifier from file in FASTA format Alan Acosta
• 2006/11/02 Re: [Biojava-l] Using Java to create BLAST searches CEZARD Timothée
• 2006/11/01 Re: [Biojava-l] Can BioJava do Multiple Alignments? mark . schreiber
• 2006/11/01 [Biojava-l] Can BioJava do Multiple Alignments? Michael Tran
• 2006/11/01 Re: [Biojava-l] Using Java to create BLAST searches Graham Etherington
• 2006/11/01 Re: [Biojava-l] Using Java to create BLAST searches Ng, Peter
• 2006/11/01 Re: [Biojava-l] Using Java to create BLAST searches Graham Etherington
• 2006/11/01 Re: [Biojava-l] Using Java to create BLAST searches Ng, Peter
• 2006/11/01 Re: [Biojava-l] Using Java to create BLAST searches Andy Yates
• 2006/11/01 Re: [Biojava-l] Using Java to create BLAST searches mark . schreiber
• 2006/11/01 [Biojava-l] Using Java to create BLAST searches Graham Etherington
• 2006/10/31 Re: [Biojava-l] pK values David Huen
• 2006/10/31 Re: [Biojava-l] pK values Mark Schreiber
• 2006/10/31 Re: [Biojava-l] fasta description line Mark Schreiber
• 2006/10/31 [Biojava-l] pK values Gerster Sarah
• 2006/10/27 [Biojava-l] fasta description line ThorstenInAnger
• 2006/10/26 Re: [Biojava-l] More extensive Bioperl-run 1.5.2RC2 tests Nathan Haigh
• 2006/10/25 [Biojava-l] More extensive Bioperl-run 1.5.2RC2 tests Nathan S. Haigh
• 2006/10/19 Re: [Biojava-l] can BioJava do alignment ? mark . schreiber
• 2006/10/19 Re: [Biojava-l] can BioJava do alignment ? Ramon Medrado
• 2006/10/19 [Biojava-l] can BioJava do alignment ? Carmel Kent
• 2006/10/18 [Biojava-l] NESCent Phyloinformatics Hackathon Hilmar Lapp
• 2006/10/13 Re: [Biojava-l] Java(TM) mark . schreiber
• 2006/10/13 [Biojava-l] Java(TM) Andreas Dräger
• 2006/10/12 Re: [Biojava-l] advice on ABIFParser Russ Kepler
• 2006/10/12 [Biojava-l] advice on ABIFParser Ed Dicks
• 2006/10/11 Re: [Biojava-l] how can i read a genbank Mark Schreiber
• 2006/10/11 [Biojava-l] how can i read a genbank Rajeswari
• 2006/10/10 [Biojava-l] Calendar NandaKumar Sreedharan
• 2006/09/29 Re: [Biojava-l] getting protein id Mark Schreiber
• 2006/09/29 [Biojava-l] getting protein id Gautam S. Thakur
• 2006/09/26 Re: [Biojava-l] how to get specific data from biosql database gang wu
• 2006/09/26 Re: [Biojava-l] how to get specific data from biosql database David Huen
• 2006/09/26 [Biojava-l] how to get specific data from biosql database gang wu

• Earlier messages
• Later messages