-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Have you tried the classes in org.biojava.bio.program.hmmer ? There is a parser in there which will read the output from HMMER.
cheers, Richard Aulia Rahma Amin wrote: > How to read and write a ProfileHMM into file? > I try XMLMarkovModel but I can't cast SimpleMarkovModel into ProfileHMM > when I read the file. > -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.2.2 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org iD8DBQFGkee64C5LeMEKA/QRAvevAKCVYFeUNByQwew6a900oj2MJjHnmACdHE8M lSJgI+HuhRAjEngMlxI+JVo= =Ft98 -----END PGP SIGNATURE----- _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
