Hi - What version of BioJava do yo have?
- Mark On 7/10/07, Aulia Rahma Amin <[EMAIL PROTECTED]> wrote: > I have a problem when running demos/dp/SearchProfile.java. The program > return an error message : > > classes\demos>java dp.SearchProfile fake.fasta > Loading sequences > Creating profile HMM > Estimating alignment as having length 999 > org.biojava.bio.BioError: Assertion Failure: Symbol i-791 was not an > indexed member of the alphabet Transitions from i-791 despite being in the > alphabet. > at > org.biojava.bio.symbol.LinearAlphabetIndex.indexForSymbol(LinearAlphabetIndex.java:118) > at > org.biojava.bio.dist.IndexedCount.increaseCount(IndexedCount.java:98) > at > org.biojava.bio.dist.SimpleDistribution$Trainer.addCount(SimpleDistribution.java:273) > at > org.biojava.bio.dist.SimpleDistributionTrainerContext.addCount(SimpleDistributionTrainerContext.java:85) > at dp.SearchProfile.randomize(SearchProfile.java:155) > at dp.SearchProfile.createProfile(SearchProfile.java:104) > at dp.SearchProfile.main(SearchProfile.java:31) > > I suspect this problem occur when the the program run train method in > SimpleDistribution class. Is this a bug or what? > > Any help will be deeply appreciated... > > ===== > Aulia Rahma Amin > Undergraduate Student > School of Electrical Engineering and Informatics > Bandung Institute of Technology > Indonesia > > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
