-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Hi Dmitry.
Thanks for your efforts and offer to contribute your code to the BioJava project. You say that the existing Blast2HTMLHanlder handler is inflexible, which is true enough. However I don't see how substituting the handler for an XSL stylesheet would make it any more flexible - the user would still have to live with an HTML format specified by the designer of the stylesheet unless the wrapping code that calls the stylesheet could somehow dynamically modify the XML based on method calls. I'm also unsure as to whether the whole transformation is appropriate for BioJava (the Blast2HTMLHandler itself is on borderline territory - saved only by the fact that it creates the reports based on SAX events that can potentially come from non-BlastXML sources). BioJava is a Java toolkit, and the transformation from XML to HTML via an XSL stylesheet doesn't require Java at all. Mark - if you're reading this - guidance, please? cheers, Richard Dmitry Repchevsky wrote: > Hello! > > I used biojava Blast2HTMLHandler, but found it unflexible and slow (?). > Finally I made an xsl stylesheet to convert blast output into html > <div> element. > Also I have a class BlastXML2HTML to make the transform , it's pretty > simple. > May I contribute it? > > Best regards, > > Dmitry > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.2.2 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org iD8DBQFGpJOs4C5LeMEKA/QRApF6AJ9kibj7mJ44W2/fTw/cYPHOx/O74gCfT3Zn b90G56jji+Ro32fq/kuxbJA= =X95V -----END PGP SIGNATURE----- _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
