Hi Richard / Dmitry A good home for this might be the biojava cookbook on the biojava wiki ( www.biojava.org). Although it isn't strictly biojava people may find it a useful example.
- Mark On 7/23/07, Richard Holland <[EMAIL PROTECTED]> wrote: > > -----BEGIN PGP SIGNED MESSAGE----- > Hash: SHA1 > > Hi Dmitry. > > Thanks for your efforts and offer to contribute your code to the BioJava > project. > > You say that the existing Blast2HTMLHanlder handler is inflexible, which > is true enough. However I don't see how substituting the handler for an > XSL stylesheet would make it any more flexible - the user would still > have to live with an HTML format specified by the designer of the > stylesheet unless the wrapping code that calls the stylesheet could > somehow dynamically modify the XML based on method calls. > > I'm also unsure as to whether the whole transformation is appropriate > for BioJava (the Blast2HTMLHandler itself is on borderline territory - > saved only by the fact that it creates the reports based on SAX events > that can potentially come from non-BlastXML sources). BioJava is a Java > toolkit, and the transformation from XML to HTML via an XSL stylesheet > doesn't require Java at all. > > Mark - if you're reading this - guidance, please? > > cheers, > Richard > > Dmitry Repchevsky wrote: > > Hello! > > > > I used biojava Blast2HTMLHandler, but found it unflexible and slow (?). > > Finally I made an xsl stylesheet to convert blast output into html > > <div> element. > > Also I have a class BlastXML2HTML to make the transform , it's pretty > > simple. > > May I contribute it? > > > > Best regards, > > > > Dmitry > > _______________________________________________ > > Biojava-l mailing list - [email protected] > > http://lists.open-bio.org/mailman/listinfo/biojava-l > > > -----BEGIN PGP SIGNATURE----- > Version: GnuPG v1.4.2.2 (GNU/Linux) > Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org > > iD8DBQFGpJOs4C5LeMEKA/QRApF6AJ9kibj7mJ44W2/fTw/cYPHOx/O74gCfT3Zn > b90G56jji+Ro32fq/kuxbJA= > =X95V > -----END PGP SIGNATURE----- > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
