Mark Schreiber has kindly written some BlastXML parsers which can be found in the biojava-blastxml module in the BioJava3 repository. If you run your blasts with XML output, it will be able to fully parse every kind of blast output supported by NCBI blast.
cheers, Richard -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: [email protected] http://www.eaglegenomics.com/ _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
