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• • Re: [Biojava-l] CRC64Checksum example Richard Holland
• [Biojava-l] How to write pairwiseAlignment output in my own format? Aaron Brata Aditama
• [Biojava-l] Webservices clients in bio-java Niall Haslam
  • Re: [Biojava-l] Webservices clients in bio-java Andreas Prlic
  • Re: [Biojava-l] Webservices clients in bio-java Niall Haslam
  • Re: [Biojava-l] Webservices clients in bio-java Mark Schreiber
  • Re: [Biojava-l] Webservices clients in bio-java James Procter
  • Re: [Biojava-l] Webservices clients in bio-java Scooter Willis
  • Re: [Biojava-l] Webservices clients in bio-java James Procter
  • Re: [Biojava-l] Webservices clients in bio-java Mark Schreiber
  • Re: [Biojava-l] Webservices clients in bio-java Andreas Prlic
• [Biojava-l] biojava on Maven2 repository mac LEE
  • Re: [Biojava-l] biojava on Maven2 repository Raphael André Bauer
  • Re: [Biojava-l] biojava on Maven2 repository helpmedicine savelife
  • Re: [Biojava-l] biojava on Maven2 repository mac LEE
  • Re: [Biojava-l] biojava on Maven2 repository Andreas Prlic
  • Re: [Biojava-l] biojava on Maven2 repository Michael Heuer
  • Re: [Biojava-l] biojava on Maven2 repository Andreas Prlic
• [Biojava-l] NullPointerException when using Viterbi algorithm in HMM. Thomas Covello
• [Biojava-l] FASTA header, loc attribute question JP
  • Re: [Biojava-l] FASTA header, loc attribute question Richard Holland
• [Biojava-l] Plans for next biojava release - modularization Andreas Prlic
• Re: [Biojava-l] SVDSuperimposer Andreas Prlic
  • Re: [Biojava-l] SVDSuperimposer Raphael André Bauer
  • Re: [Biojava-l] SVDSuperimposer Andreas Prlic
  • Re: [Biojava-l] SVDSuperimposer Raphael André Bauer
• [Biojava-l] Biojava-doc in chm forma sheng zhao
• [Biojava-l] FASTA parsing bug ? JP
  • Re: [Biojava-l] FASTA parsing bug ? Richard Holland
  • Re: [Biojava-l] FASTA parsing bug ? JP
  • Re: [Biojava-l] FASTA parsing bug ? Richard Holland
  • Re: [Biojava-l] FASTA parsing bug ? Josh Goodman
  • Re: [Biojava-l] FASTA parsing bug ? JP
  • Re: [Biojava-l] FASTA parsing bug ? Mark Schreiber
  • Re: [Biojava-l] FASTA parsing bug ? Josh Goodman
  • Re: [Biojava-l] FASTA parsing bug ? Mark Schreiber
  • Re: [Biojava-l] FASTA parsing bug ? Mark Schreiber
  • Re: [Biojava-l] FASTA parsing bug ? Richard Holland
  • Re: [Biojava-l] FASTA parsing bug ? Josh Goodman
  • Re: [Biojava-l] FASTA parsing bug ? Scott Markel
• [Biojava-l] NETTAB 2009: Deadline postponed to May 4, 2009, for Oral communications Paolo Romano
• [Biojava-l] Cannot edit RichSequence larger than 16Kbp Ian Yi-Feng Chang
• [Biojava-l] BioJava Question - Evolutionary Rate Calculation JP
  • Re: [Biojava-l] BioJava Question - Evolutionary Rate Calculation Andreas Prlic
  • Re: [Biojava-l] BioJava Question - Evolutionary Rate Calculation Andreas Prlic
• [Biojava-l] A problem in reading remote AB1 files Hüseyin Kaya
• [Biojava-l] User interface example for Cookbook Jolyon Holdstock
• [Biojava-l] BioJava 1.7 released Andreas Prlic
• [Biojava-l] BOSC abstract Andreas Prlic
  • Re: [Biojava-l] [Biojava-dev] BOSC abstract Richard Holland
• [Biojava-l] MMCIF parser? tallpaulinjax
  • Re: [Biojava-l] MMCIF parser? Andreas Prlic
  • Re: [Biojava-l] MMCIF parser? Paul B
• Re: [Biojava-l] [Biojava-dev] Leadership Andreas Prlic
  • Re: [Biojava-l] [Biojava-dev] Leadership Richard Holland
  • [Biojava-l] [Biojava-dev] Leadership Richard Holland
  • Re: [Biojava-l] [Biojava-dev] Leadership Scooter Willis
  • Re: [Biojava-l] [Biojava-dev] Leadership Richard Holland
  • Re: [Biojava-l] [Biojava-dev] Leadership Andreas Prlic
  • Re: [Biojava-l] [Biojava-dev] Leadership Andreas Prlic
  • Re: [Biojava-l] [Biojava-dev] Leadership Andreas Prlic
• Re: [Biojava-l] [Biojava-dev] How to convert a multiple alignment to a PSSM matrix ? Mark Schreiber
• [Biojava-l] demos in version biojava 1.6 simon rayner
• [Biojava-l] biojava @ ISMB and BOSC Andreas Prlic
  • Re: [Biojava-l] biojava @ ISMB and BOSC Scott Markel
  • Re: [Biojava-l] biojava @ ISMB and BOSC Richard Holland
• [Biojava-l] Rosetta Academic Training Webinar Nir London
• [Biojava-l] NoClassDefFoundError Charles Imbusch
  • Re: [Biojava-l] NoClassDefFoundError Hamed, Ahmed A.
  • Re: [Biojava-l] NoClassDefFoundError Richard Holland
  • Re: [Biojava-l] NoClassDefFoundError Hamed, Ahmed A.
  • Re: [Biojava-l] NoClassDefFoundError Richard Holland
  • Re: [Biojava-l] NoClassDefFoundError Charles Imbusch
  • Re: [Biojava-l] NoClassDefFoundError Richard Holland
• [Biojava-l] fjoin algorithm implementation in Java (submission to BioJava) JP
  • Re: [Biojava-l] fjoin algorithm implementation in Java (submission to BioJava) mark . schreiber
• [Biojava-l] Problem with SingleDP.viterbi(..) Stephan Neumann
• [Biojava-l] OBF application for Summer of Code has been rejected Hilmar Lapp
• [Biojava-l] Java Developer and Scientific Software Developer Jobs at Protein Data Bank, UCSD Peter Rose
• Re: [Biojava-l] Out of heap space during structure parsing. Paul B
  • Re: [Biojava-l] Out of heap space during structure parsing. Andreas Prlic
  • Re: [Biojava-l] Out of heap space during structure parsing. Paul B
  • Re: [Biojava-l] Out of heap space during structure parsing. Paul B
  • [Biojava-l] Out of heap space during structure parsing. Paul B
• [Biojava-l] Reading meta data in PDB file? Ashika Umanga Umagiliya
  • Re: [Biojava-l] Reading meta data in PDB file? Ashika Umanga Umagiliya
  • Re: [Biojava-l] Reading meta data in PDB file? Andreas Prlic
  • Re: [Biojava-l] Reading meta data in PDB file? Andreas Prlic
• [Biojava-l] Stop condition for blast parser Marcel Huntemann
  • Re: [Biojava-l] Stop condition for blast parser Marcel Huntemann
  • Re: [Biojava-l] Stop condition for blast parser mark . schreiber
  • Re: [Biojava-l] Stop condition for blast parser Marcel Huntemann
  • Re: [Biojava-l] Stop condition for blast parser mark . schreiber
  • Re: [Biojava-l] Stop condition for blast parser Marcel Huntemann
• Re: [Biojava-l] Biojava-l Digest, Vol 74, Issue 1 Sej Modha
• [Biojava-l] Parsing out identities from a blast file Ben Temperton
  • Re: [Biojava-l] Parsing out identities from a blast file mark . schreiber
• [Biojava-l] PDB parsing: Calculate absolute atom numbers of a chain. Ashika Umanga Umagiliya
  • Re: [Biojava-l] PDB parsing: Calculate absolute atom numbers of a chain. Andreas Prlic
• [Biojava-l] Zuker Algorithm Björn Ole Pfannkuche
• Re: [Biojava-l] BioJava and backbone amino acids Andreas Prlic
  • Re: [Biojava-l] BioJava and backbone amino acids Andreas Prlic
• [Biojava-l] biojava 1.7 release schedule Andreas Prlic
• [Biojava-l] Java programmatic access course at the EMBL-EBI James Watson
• [Biojava-l] Biojava Parsers : Apply quality values for contig ? Ashika Umanga Umagiliya
• [Biojava-l] Sequence Annotation on Gui Saulo Alves
• Re: [Biojava-l] Regarding problen in Alignment Andreas Dräger
  • Re: [Biojava-l] Regarding problen in Alignment Andreas Dräger
• [Biojava-l] problem in alignment Anant Jain
  • Re: [Biojava-l] problem in alignment Andreas Dräger
  • Re: [Biojava-l] problem in alignment Andreas Dräger
• [Biojava-l] Regarding BioJava Anant Jain
  • Re: [Biojava-l] Regarding BioJava Richard Holland
• [Biojava-l] Saving back chromatogram? Ashika Umanga Umagiliya
  • Re: [Biojava-l] Saving back chromatogram? Andy Yates
  • Re: [Biojava-l] Saving back chromatogram? Ashika Umanga Umagiliya
  • Re: [Biojava-l] Saving back chromatogram? Russ Kepler
  • Re: [Biojava-l] Saving back chromatogram? Ashika Umanga Umagiliya
  • Re: [Biojava-l] Saving back chromatogram? Andy Yates
  • Re: [Biojava-l] Saving back chromatogram? Richard Holland
• [Biojava-l] A little problem Anant Jain
  • Re: [Biojava-l] A little problem Richard Holland
  • [Biojava-l] [ANN]VTD-XML 2.5 crackeur
• [Biojava-l] Draft paper submission deadline extended: BCBGC-09 John Edward
  • [Biojava-l] Draft paper submission deadline extended: BCBGC-09 John Edward
• [Biojava-l] Google Summer of Code: Call for Bio* Volunteers Hilmar Lapp
  • Re: [Biojava-l] Google Summer of Code: Call for Bio* Volunteers Hilmar Lapp
  • [Biojava-l] Google Summer of Code: application submitted, action needed Hilmar Lapp
• [Biojava-l] Multiple Sequence Viewer Scooter Willis
  • Re: [Biojava-l] Multiple Sequence Viewer Russ Kepler
  • Re: [Biojava-l] Multiple Sequence Viewer Scooter Willis
  • Re: [Biojava-l] Multiple Sequence Viewer Russ Kepler
  • Re: [Biojava-l] Multiple Sequence Viewer Anant Jain
  • Re: [Biojava-l] Multiple Sequence Viewer Richard Holland
  • Re: [Biojava-l] Multiple Sequence Viewer Mark Schreiber
• [Biojava-l] DNA/DNA Folding Björn Ole Pfannkuche
• [Biojava-l] [Off the topic] Selecting template from clustering tree? Ashika Umanga Umagiliya
• [Biojava-l] alignments simon rayner
  • Re: [Biojava-l] alignments Richard Holland
• [Biojava-l] Phylogenetic Trees Scooter Willis
  • Re: [Biojava-l] Phylogenetic Trees Richard Holland
• [Biojava-l] [Off the Topic] Homology prediction of large number of sequences! Ashika Umanga Umagiliya
  • Re: [Biojava-l] [Off the Topic] Homology prediction of large number of sequences! Mark Schreiber
• [Biojava-l] Different chain lengths using struc.getChainByPDB and iterating over a structure and it's chain Raphael André Bauer
  • Re: [Biojava-l] Different chain lengths using struc.getChainByPDB and iterating over a structure and it's chain Andreas Prlic
  • Re: [Biojava-l] Different chain lengths using struc.getChainByPDB and iterating over a structure and it's chain Raphael André Bauer
• [Biojava-l] Sequence start/end location Hamed, Ahmed A.
  • Re: [Biojava-l] Sequence start/end location Mark Schreiber
  • Re: [Biojava-l] Sequence start/end location Mark Schreiber
• [Biojava-l] Reading AB1 files and drawing chromatogram ? Ashika Umanga Umangiliya
  • Re: [Biojava-l] Reading AB1 files and drawing chromatogram ? Andy Yates
• [Biojava-l] Eagle Genomics is hiring Richard Holland
• [Biojava-l] closing this week: Registrations for DAS workshop. Jonathan Warren
• [Biojava-l] Rosetta Academic Training Workshop Nir London
• [Biojava-l] Depreciated methods Hamed, Ahmed A.
  • Re: [Biojava-l] Depreciated methods Richard Holland
  • Re: [Biojava-l] Depreciated methods Hamed, Ahmed A.
  • Re: [Biojava-l] Depreciated methods Richard Holland
• [Biojava-l] Problem with blast file parser Marcel Huntemann
  • Re: [Biojava-l] Problem with blast file parser Charles Imbusch
  • Re: [Biojava-l] Problem with blast file parser Mark Schreiber
  • Re: [Biojava-l] Problem with blast file parser Marcel Huntemann
  • Re: [Biojava-l] Problem with blast file parser Charles Imbusch
  • Re: [Biojava-l] Problem with blast file parser Mark Schreiber
  • Re: [Biojava-l] Problem with blast file parser Charles Imbusch
  • Re: [Biojava-l] Problem with blast file parser Richard Holland
  • [Biojava-l] Genbank file parser error gang wu
  • Re: [Biojava-l] Genbank file parser error Mark Schreiber
  • Re: [Biojava-l] Genbank file parser error Richard Holland
  • Re: [Biojava-l] Genbank file parser error gang wu
  • Re: [Biojava-l] Genbank file parser error gwu
  • Re: [Biojava-l] Problem with blast file parser Mark Schreiber
  • Re: [Biojava-l] Problem with blast file parser Marcel Huntemann
  • Re: [Biojava-l] Problem with blast file parser Andreas Prlic
  • Re: [Biojava-l] Problem with blast file parser Marcel Huntemann
  • Re: [Biojava-l] Problem with blast file parser Marcin Swiatek
• [Biojava-l] Off topic: JDK6 and JAX-WS 2.1 Mark Schreiber
• [Biojava-l] How to get translated sequence out of blast result Marcel Huntemann
• [Biojava-l] [Off the Topic ] Bioinformatics for software engineers? Ashika Umanga Umagiliya
  • Re: [Biojava-l] [Off the Topic ] Bioinformatics for software engineers? Richard Holland
  • Re: [Biojava-l] [Off the Topic ] Bioinformatics for software engineers? Mark Schreiber
  • Re: [Biojava-l] [Off the Topic ] Bioinformatics for software engineers? Ashika Umanga Umagiliya
• [Biojava-l] Genebank Webservices ? Ashika Umanga Umagiliya
  • Re: [Biojava-l] Genebank Webservices ? Richard Holland
• [Biojava-l] Genebank Webservices (corrrect result page) Ashika Umanga Umagiliya
  • Re: [Biojava-l] Genebank Webservices (corrrect result page) Ashika Umanga Umagiliya
• [Biojava-l] Join the LinkedIn BioJava group Mark Schreiber
• [Biojava-l] How can I calculate the RMSD of Global Alignment? Armita Sheari
  • Re: [Biojava-l] [Biojava-dev] How can I calculate the RMSD of Global Alignment? Andreas Prlic
  • Re: [Biojava-l] [Biojava-dev] How can I calculate the RMSD of Global Alignment? Armita Sheari
  • Re: [Biojava-l] [Biojava-dev] How can I calculate the RMSD of Global Alignment? Andreas Prlic
• [Biojava-l] BlastXML parsers Richard Holland
• [Biojava-l] Please help - BugZilla Richard Holland
• [Biojava-l] Annotations and Hibernate IDs Richard Holland
• [Biojava-l] Biojava3 updates Richard Holland
• [Biojava-l] Retrieving Partial gene/CDS information Bandaru, Sandya (NIH/NIAID) [C]
  • Re: [Biojava-l] Retrieving Partial gene/CDS information Richard Holland
  • Re: [Biojava-l] Retrieving Partial gene/CDS information Hilmar Lapp
  • Re: [Biojava-l] Retrieving Partial gene/CDS information Richard Holland
• [Biojava-l] Job - Scientific Software Developer at RCSB PDB Peter Rose

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