Hi, We had a couple of bug reports recently regarding issues that already got fixed in the latest biojava builds from SVN. I think it is time to start preparing the next biojava release ( 1.7 ) to make sure everybody gets up to the latest status...
Andreas On Thu, Jan 29, 2009 at 12:55 PM, Marcel Huntemann <[email protected]> wrote: > Hi Charles! > > I've "found" a solution now. After dealing a couple of days with the > terrible xml output of blast and BioJava's BlastXMLParser (which also > wasn't working properly), I decided to have a look at the source code and > try to figure out myself what was wrong with the BlastLikeSAXParser. So I > checked out the present status of the source code via the anonymous svn > checkout (howto here: http://biojava.org/wiki/CVS_to_SVN_Migration). After > a couple of hours and me not finding an error that could cause this > behavior, I thought I'll just give it a try and compiled the checked out > source via ant. Then used the new created biojava.jar and suddenly > everything went perfectly! > So, whatever the error was (unfortunately I don't have the old source code > to make a diff on certain files), it is already corrected in the > up-to-the-minute version in the subversion system. > Try it out! > > Cheers, > Marcel > > > Charles Imbusch wrote: >> Hello Marcel, >> >> I also do experience the problem that the parser is skipping >> the even result numbers. I have not found a sufficient solution >> for that, so I gave up on parsing on a blast result file containing >> multiple results. Instead I splitted up the big fasta file into >> serveral ones, so that I just get one result for one fasta file. >> That works, even it's not the best solution for it. >> >> Let me know if you find another solution for that problem. >> >> Cheers, >> Charles >> >> > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
