Hi Ahmed - For a first time contribution it would probably be easiest to post something to the list and someone with a development account can check it in for you.
Please make sure to add javadoc comments and a basic JUnit test for any classes you make. - Mark On Sat, Jan 31, 2009 at 3:13 PM, Hamed, Ahmed A. <[email protected]> wrote: > Dear Mark, > Thank you for your response. I would be happy to contribute my PTTParser if > you point me to where/how to check it in. I am still new to the BioJava > community and there is so much to learn. > Best wishes, > Ahmed > > On Fri, Jan 30, 2009 at 11:15 PM, Mark Schreiber <[email protected]> > wrote: >> >> Hi - >> >> Unfortunately your FASTA file won't contain any feature information >> which could tell you the start and end. If you don't want to get the >> info from the PTT file you might want to look at parsing the Genbank >> file instead which will have the feature information. >> >> A PTT parser might not be a bad thing for BioJava though. If you write >> one please consider adding it. >> >> - Mark >> >> On Sat, Jan 31, 2009 at 10:41 AM, Hamed, Ahmed A. >> <[email protected]> wrote: >> > >> > Hello list, >> > I am trying to get find the start and end location of a gene in a gene >> > sequence. I am reading from a gene FASTA database file. Is there a >> > built-in >> > method that I can use? The alternative is really painful since I have to >> > parse a ptt file and not exactly working for me. >> > Thanks very much! >> > Ahmed >> > _______________________________________________ >> > Biojava-l mailing list - [email protected] >> > http://lists.open-bio.org/mailman/listinfo/biojava-l > > > > -- > Ahmed Abdeen Hamed > Scientific Informatics Project Leader > Marine Biological Laboratory Woods Hole, MA > -- > Ph.D. student, Complex Systems > School of Informatics, Indiana University > > > > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
