I don't know about high performance but the problem is very parallel so if you can get your hands on a cluster you can run one sequence on each processor.
Maybe there is a cloud compute facility you could use if a cluster is not available. You might also want to try a pilot experiment first. There is bound to be some redundancy in some of those proteins which will give nearly identical models. - Mark On Thu, Feb 5, 2009 at 1:57 PM, Ashika Umanga Umagiliya <[email protected]> wrote: > > Greetings all, > > I have about 60,000 sequences and want to predict the 3D structure (Homology > modelling) for all the structures.I decided to use Modeller first , and seems > that would take months to predict all those structures. > Is there any HighPerformance prediction server which I have use for this? Not > submitting data through webbased interface , I want to automate the process , > cuz 60K is alot of data! > > Thanks in advance, > umanga > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
