Greetings,
I use 'Modeller' for homology modeling and, during the process I get a
clustering tree shown as following.And I have to select the best
template using this tree.I was wondering whether there are any tools/features
in BioJava that I can use for this?
I don't know the conditions to select the best template (I am from Computer
science background),but seems I can you fuzzylogic ,if I know the criteria well.
Any tips?
Best Regards,
umanga
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Sequence identity comparison (ID_TABLE):
Diagonal ... number of residues;
Upper triangle ... number of identical residues;
Lower triangle ... % sequence identity, id/min(length).
1b8pA @11bdmA @11civA @25mdhA @27mdhA @21smkA @2
1b8pA @1 327 194 147 151 153 49
1bdmA @1 61 318 152 167 155 56
1civA @2 45 48 374 139 304 53
5mdhA @2 46 53 42 333 139 57
7mdhA @2 47 49 87 42 351 48
1smkA @2 16 18 17 18 15 313
Weighted pair-group average clustering based on a distance matrix:
.----------------------- 1b8pA @1.9
39.0000
|
.-------------------------------- 1bdmA @1.8
50.5000
|
.------------------------------------ 5mdhA @2.4
55.3750
|
| .--- 1civA @2.8
13.0000
| |
.---------------------------------------------------------- 7mdhA @2.4
83.2500
|
.------------------------------------------------------------ 1smkA @2.5
+----+----+----+----+----+----+----+----+----+----+----+----+
86.0600 73.4150 60.7700 48.1250 35.4800 22.8350 10.1900
79.7375 67.0925 54.4475 41.8025 29.1575 16.5125
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