Hi Umanga, You will need to use the getPDBCode() method to obtain the PDB residue number as well as the chain ID to select the residue in Jmol.
Andreas 2009/3/4 Ashika Umanga Umagiliya <[email protected]>: > Greetings all, > > From a database; I retrieve PDB-id ,chainID and epitope positions.These > epitope positions are calculated relative to its Chain. > I want to select these epitope positions (residues) in JMol.But in jmol the > select query support only absolute residues numbers. > > Ex: > CHAIN L : residues 10,12,13,15 (relative to chain L) > But in PDB file (in JMOL) the values are 210,212,213,215 - this are what I > want to calculate? > > Anyway to calculate this? > > Thanks in advance, > Umanga > > -- > アシカ ウマンガ ウマギリヤ > ㈱国際バイオインフォマティクス研究所（BiGG) > 〒140-0001 > 東京都品川区北品川3-6-9 アンドウビル8F > TEL:03-6679-8763 > FAX:03-6679-8764 > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l >
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