Hi! I followed the example in http://biojava.org/wiki/BioJava:CookBook:Blast:Echo to create my own blast parser. I've the problem that I am often only interested in the hits of a certain query. Is there a way to tell the blast parser via my customized SearchContentHandler to stop parsing after it found this certain queryId? Because often the wanted queryId will be in the beginning of the blast file and I don't want the parser to run over the really, really long rest of the file, even if it doesn't do much during that. I just want the parser to stop then. Can I implement that somehow in my customized SearchContentHandler or do I've to change the source code of biojava somewhere for that?
Thanks, Marcel _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
