Dear Richard, I know you are answering Charles's question below. However, I thought it might be worthwhile mentioning that Java ignores the classpath argument if you are running a jar i.e. using "-jar" option. Best wishes, Ahmed
On Tue, Mar 24, 2009 at 3:12 PM, Richard Holland <[email protected]>wrote: > Depends what you mean by 'installed biojava'. > > Have you tried running this command: > > java -jar MPI.jar -cp /path/to/biojava.jar > > If that works, then the problem will be that your biojava.jar is not > installed in the correct location for java to pick it up system-wide. > > Compiling the demos does not rely on having jars installed as it picks > everything up from inside the biojava source distribution. > > cheers, > Richard > > Charles Imbusch wrote: > > Hello, > > > > I'm using Netbeans and Biojava on my Laptop. Netbeans creates a jar file > > for my project and I can successfully execute it. > > > > Now I would like to execute the java code on another machine. I > > installed Biojava on > > that machine as well and copied the jar file to it. > > > > But I get an error message like this: > > > > char...@nougat:~$ java -jar MPI.jar > > Exception in thread "main" java.lang.NoClassDefFoundError: > > org/biojava/bio/BioException > > > > I checked my installation (on nougat ) and tried to compile one of the > > example files provided in the > > demo folder of the Biojava distribution. The compilation worked out. > > > > No I'm really wondering what can cause that error. > > > > Any answer is appreciated. > > > > Cheers, > > Charles > > _______________________________________________ > > Biojava-l mailing list - [email protected] > > http://lists.open-bio.org/mailman/listinfo/biojava-l > > > > -- > Richard Holland, BSc MBCS > Finance Director, Eagle Genomics Ltd > T: +44 (0)1223 654481 ext 3 | E: [email protected] > http://www.eaglegenomics.com/ > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- Ahmed Abdeen Hamed Scientific Informatics Project Leader Marine Biological Laboratory Woods Hole, MA -- Ph.D. student, Complex Systems School of Informatics, Indiana University _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
