Hi Michal, The SVD superimposer actually does the same Singular Value Decomposition in both BioJava and BioPython. The difference is that BioJava also contains a complete alignment algorithm that can calculate a structure alignment, if the region of similarity between 2 proteins is not known a priori.
See also here: http://biojava.org/wiki/BioJava:CookBook:PDB:align and http://biojava.org/wiki/BioJava:CookBook:PDB:aboutalign Andreas On Thu, May 7, 2009 at 5:24 AM, Michal Lorenc <[email protected]> wrote: > Hello Andreas, > SVDSuperimposer from BioPython works only with proteins which have the same > length, but in BioJava it does not matter. > > Do you published how SVDSuperimposer in BioJava works or do you know where > could I found more information? > > Thank you in advance. > > Best regards, > > Michal > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
