Hi Richard, I am forwarding your message to the mailing list, since that is the best place to meet other people interested in genetics application.
The BioJava source code is available via anonymous svn or the download page on the wiki. Andreas ---------- Forwarded message ---------- From: Finkers, Richard <[email protected]> Date: Sat, Apr 17, 2010 at 12:46 AM Subject: RE: Biojava3-genetics To: Andreas Prlic <[email protected]> Hi Andreas, To start with, associations with e.g. sequence variation (454) and phenotype data within larger sets of genetically different individuals. This will be code which I will have to write the coming year for one of my projects. I am planning to use this in combination the sequence and phylogeny based biojava modules. I also might consider migrating some of my current code to this module. This includes graphical representations of genetic data but also some statistical analysis for which we use the package R for the calculations but the rest of the data handling / formatting is done in Java. Some of the functionality, that I am thinking about, is available from other packages but I did not find the (java) source code. Richard -----Original Message----- From: [email protected] on behalf of Andreas Prlic Sent: Fri 2010-04-16 19:39 To: Finkers, Richard Cc: [email protected] Subject: Re: Biojava3-genetics Hi Richard, any contribution is welcome. What do you have in mind in particular? Perhaps there is already something there along those lines... Andreas On Thu, Apr 15, 2010 at 11:43 PM, Richard Finkers <[email protected] >wrote: > Dear List, > > I would be interested in adding a module for genetic analysis to the > biojava3 project. Are there others who are interested in this as well and > with who should I discuss this further? > > Thanks, > Richard > > > -- > Dr. Richard Finkers > Researcher Plant Breeding > Wageningen UR Plant Breeding > P.O. Box 16, 6700 AA, Wageningen, The Netherlands > Wageningen Campus, Building 107, Droevendaalsesteeg 1, 6708 PB > Wageningen, The Netherlands > Tel. +31-317-484165 Fax +31-317-418094 > http://www.plantbreeding.wur.nl/ <http://www.plantbreeding.wur.nl> > https://www.eu-sol.wur.nl/ <https://www.eu-sol.wur.nl> > https://cbsgdbase.wur.nl/ <https://cbsgdbase.wur.nl> > http://solgenomics.wur.nl/ <http://solgenomics.wur.nl> > http://www.disclaimer-uk.wur.nl/ > > -- ----------------------------------------------------------------------- Dr. Andreas Prlic Senior Scientist, RCSB PDB Protein Data Bank University of California, San Diego (+1) 858.246.0526 ----------------------------------------------------------------------- -- ----------------------------------------------------------------------- Dr. Andreas Prlic Senior Scientist, RCSB PDB Protein Data Bank University of California, San Diego (+1) 858.246.0526 ----------------------------------------------------------------------- _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
