We did not migrate the blast xml parser from 1.8 to 3.0. Typically I will load the XML as a DOM object and use xpath to query the desired results. I have some code in the biojava3-genome module (org.biojava3.genome.BlastXMLQuery) that could possibly provide a solution for you depending on what you are trying to accomplish. Let me know if you have specific requirements that could help motivate formal blast XML->Java objects support in Biojava3.
Thanks Scooter 2011/4/27 François Le Fèvre <[email protected]>: > Dear all, > > I have just a difficulty: is there still a blast xml parser in the biojava > 3.0-SNAPSHOT > I am not able to find it... > > I have found > http://www.biojava.org/docs/api1.8/org/biojava/bio/program/sax/blastxml/BlastXMLParser.html > with a good tutorial here > http://biojava.org/wiki/BioJava:CookBook:Blast:Echo > > but it seems to be part of biojava 1.8 > > can you confirm me? > > Thanks > > Francois > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
