Hi, I am developing an app where features are extracted from a large genbank file, and processed: multiple alignment, annotation....
The feature extraction is a real bottleneck in my app. It consumes 87% of total execution time. Feature extraction is done via: FeatureFilter ff = new FeatureFilter.ByAnnotation(key, value); FeatureHolder fh = richSequence.filter(ff); Feature feat = fh.features().next(); ... Any suggestion on how to improve the performance of features extraction is welcome. Thanks, khalil _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
