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• [Biojava-l] Unique reads Mic
• [Biojava-l] FASTA Header Parser Hannes Brandstätter-Müller
  • Re: [Biojava-l] FASTA Header Parser Scooter Willis
  • Re: [Biojava-l] FASTA Header Parser Hannes Brandstätter-Müller
• [Biojava-l] trim adapter segment Jason
  • Re: [Biojava-l] trim adapter segment Hannes Brandstätter-Müller
• [Biojava-l] Registrations for DAS Workshop 2012 Jonathan Warren
• [Biojava-l] Cookbook entry - feedback please Hannes Brandstätter-Müller
  • Re: [Biojava-l] Cookbook entry - feedback please Andreas Prlic
  • Re: [Biojava-l] Cookbook entry - feedback please Hannes Brandstätter-Müller
  • Re: [Biojava-l] Cookbook entry - feedback please Andreas Prlic
• [Biojava-l] Is a modification of the FASTA parser for my needs easy or should I implement something else? Hannes Brandstätter-Müller
  • Re: [Biojava-l] Is a modification of the FASTA parser for my needs easy or should I implement something else? Peter Cock
  • Re: [Biojava-l] Is a modification of the FASTA parser for my needs easy or should I implement something else? Andreas Prlic
  • Re: [Biojava-l] Is a modification of the FASTA parser for my needs easy or should I implement something else? Hannes Brandstätter-Müller
  • Re: [Biojava-l] Is a modification of the FASTA parser for my needs easy or should I implement something else? Andreas Prlic
  • Re: [Biojava-l] Is a modification of the FASTA parser for my needs easy or should I implement something else? Hannes Brandstätter-Müller
  • Re: [Biojava-l] Is a modification of the FASTA parser for my needs easy or should I implement something else? Peter Troshin
• [Biojava-l] mmView - a tool for mmCIF exploration Daniel Svozil
  • Re: [Biojava-l] mmView - a tool for mmCIF exploration Andreas Prlic
  • Re: [Biojava-l] mmView - a tool for mmCIF exploration Daniel Svozil
• [Biojava-l] IndexOutOfBounds Exception when performing Pairwise Alignment Hannes Brandstätter-Müller
  • Re: [Biojava-l] IndexOutOfBounds Exception when performing Pairwise Alignment Andreas Prlic
  • Re: [Biojava-l] IndexOutOfBounds Exception when performing Pairwise Alignment Hannes Brandstätter-Müller
  • Re: [Biojava-l] IndexOutOfBounds Exception when performing Pairwise Alignment Andreas Prlic
  • Re: [Biojava-l] IndexOutOfBounds Exception when performing Pairwise Alignment Hannes Brandstätter-Müller
  • Re: [Biojava-l] IndexOutOfBounds Exception when performing Pairwise Alignment Hannes Brandstätter-Müller
  • Re: [Biojava-l] IndexOutOfBounds Exception when performing Pairwise Alignment Hannes Brandstätter-Müller
  • Re: [Biojava-l] IndexOutOfBounds Exception when performing Pairwise Alignment Andreas Prlic
• [Biojava-l] biojava-ensembl Lance Frohman
• [Biojava-l] Exception thrown when parsing GenBank file Dietmar Birzer
  • Re: [Biojava-l] Exception thrown when parsing GenBank file Peter Cock
  • [Biojava-l] Antw: Re: Exception thrown when parsing GenBank file Dietmar Birzer
  • Re: [Biojava-l] Antw: Re: Exception thrown when parsing GenBank file Andreas Prlic
  • Re: [Biojava-l] Antw: Re: Exception thrown when parsing GenBank file George Waldon
  • Re: [Biojava-l] Antw: Re: Exception thrown when parsing GenBank file Peter Cock
• [Biojava-l] Rename RichSequence Khalil El Mazouari
  • Re: [Biojava-l] Rename RichSequence George Waldon
• [Biojava-l] BioJava in education Andreas Prlic
  • Re: [Biojava-l] BioJava in education Chris Friedline
  • Re: [Biojava-l] BioJava in education Andreas Prlic
  • Re: [Biojava-l] BioJava in education Chris Friedline
  • Re: [Biojava-l] BioJava in education simon rayner
  • Re: [Biojava-l] BioJava in education Andreas Prlic
  • Re: [Biojava-l] BioJava in education Amr AL-Hossary
  • Re: [Biojava-l] BioJava in education Amr AL-Hossary
  • Re: [Biojava-l] BioJava in education Hannes Brandstätter-Müller
• [Biojava-l] Sequence Alignment and IUB Codes Hannes Brandstätter-Müller
  • Re: [Biojava-l] Sequence Alignment and IUB Codes Andreas Prlic
  • Re: [Biojava-l] Sequence Alignment and IUB Codes Hannes Brandstätter-Müller
• [Biojava-l] Calculating edit distance between 2 DNA Sequences Hannes Brandstätter-Müller
  • Re: [Biojava-l] Calculating edit distance between 2 DNA Sequences Hannes Brandstätter-Müller
  • Re: [Biojava-l] Calculating edit distance between 2 DNA Sequences Andreas Prlic
  • Re: [Biojava-l] Calculating edit distance between 2 DNA Sequences forumjspro
  • Re: [Biojava-l] Calculating edit distance between 2 DNA Sequences Hannes Brandstätter-Müller
  • Re: [Biojava-l] Calculating edit distance between 2 DNA Sequences Hannes Brandstätter-Müller
  • Re: [Biojava-l] Calculating edit distance between 2 DNA Sequences Andreas Prlic
  • Re: [Biojava-l] Calculating edit distance between 2 DNA Sequences Chris Friedline
• Re: [Biojava-l] [Biojava-dev] Genbank import Andreas Prlic
• Re: [Biojava-l] queries on biojava Andreas Prlic
• [Biojava-l] What's a good sequence to highlight features in BioJava? John Kern
  • Re: [Biojava-l] What's a good sequence to highlight features in BioJava? Andreas Prlic
  • Re: [Biojava-l] What's a good sequence to highlight features in BioJava? John Kern
• [Biojava-l] demo directory in API John Kern
  • Re: [Biojava-l] demo directory in API Andreas Prlic
• [Biojava-l] demos from 1.8 John Kern
  • Re: [Biojava-l] demos from 1.8 Andreas Prlic
  • Re: [Biojava-l] demos from 1.8 John Kern
  • Re: [Biojava-l] demos from 1.8 Andreas Prlic
• [Biojava-l] Multiple Sequence Alignment - Limits? John Kern
• [Biojava-l] Undeclared/uncaught exception in Fasta Parser Hannes Brandstätter-Müller
• Re: [Biojava-l] Biojava-l Digest, Vol 105, Issue 12 Khalil El Mazouari
• [Biojava-l] Status of org.biojava3.data.sequence.SequenceUtil ? jvb
  • Re: [Biojava-l] Status of org.biojava3.data.sequence.SequenceUtil ? Peter Troshin
• Re: [Biojava-l] Multiple Sequence Alignment - Limits? Hannes Brandstätter-Müller
  • Re: [Biojava-l] Multiple Sequence Alignment - Limits? Andreas Prlic
  • Re: [Biojava-l] Multiple Sequence Alignment - Limits? Hannes Brandstätter-Müller
  • Re: [Biojava-l] Multiple Sequence Alignment - Limits? Spencer Bliven
  • Re: [Biojava-l] Multiple Sequence Alignment - Limits? Hannes Brandstätter-Müller
• [Biojava-l] is the tutorial in sync with the latest version? John Kern
  • Re: [Biojava-l] is the tutorial in sync with the latest version? Andreas Prlic
  • Re: [Biojava-l] is the tutorial in sync with the latest version? John Kern
• Re: [Biojava-l] User defined substitution matrix. Andreas Prlic
• [Biojava-l] Stockholm Parser Implementation? Vincent Xue
  • Re: [Biojava-l] Stockholm Parser Implementation? Andreas Prlic
  • Re: [Biojava-l] Stockholm Parser Implementation? Jim Procter
• Re: [Biojava-l] Biojava-l Digest, Vol 105, Issue 2 Muhammad Tariq Pervez
• Re: [Biojava-l] Biojava-l Digest, Vol 105, Issue 5 Shakuntala Baichoo
• Re: [Biojava-l] BioJava Help Andreas Prlic
  • Re: [Biojava-l] BioJava Help Andreas Prlic
  • Re: [Biojava-l] BioJava Help Andreas Prlic
• [Biojava-l] losing meta-info after multiple sequence alignment Hannes Brandstätter-Müller
  • Re: [Biojava-l] losing meta-info after multiple sequence alignment Hannes Brandstätter-Müller
  • Re: [Biojava-l] losing meta-info after multiple sequence alignment Scooter Willis
  • Re: [Biojava-l] losing meta-info after multiple sequence alignment Hannes Brandstätter-Müller
  • Re: [Biojava-l] losing meta-info after multiple sequence alignment Spencer Bliven
• [Biojava-l] NullPointerException when using Alignments.getMultipleSequenceAlignment Hannes Brandstätter-Müller
  • Re: [Biojava-l] NullPointerException when using Alignments.getMultipleSequenceAlignment Hannes Brandstätter-Müller
  • Re: [Biojava-l] NullPointerException when using Alignments.getMultipleSequenceAlignment Andreas Prlic
  • Re: [Biojava-l] NullPointerException when using Alignments.getMultipleSequenceAlignment Spencer Bliven
  • Re: [Biojava-l] NullPointerException when usingAlignments.getMultipleSequenceAlignment Amr AL-Hossary
  • Re: [Biojava-l] NullPointerException when using Alignments.getMultipleSequenceAlignment Hannes Brandstätter-Müller
  • Re: [Biojava-l] NullPointerException when using Alignments.getMultipleSequenceAlignment Andreas Prlic
  • Re: [Biojava-l] NullPointerException when using Alignments.getMultipleSequenceAlignment Hannes Brandstätter-Müller
  • Re: [Biojava-l] NullPointerException when using Alignments.getMultipleSequenceAlignment Andreas Prlic
• [Biojava-l] VCF parser Tiago Antão
• [Biojava-l] couple of new structure alignment & protein domain features Andreas Prlic
• [Biojava-l] NullPointerException in Hidden Markov Model Hashem Koohy
• Re: [Biojava-l] Biojava-l Digest, Vol 104, Issue 7 JAX
• [Biojava-l] why can't biojava fold RNA? quan zou
  • Re: [Biojava-l] why can't biojava fold RNA? Andreas Prlic
  • Re: [Biojava-l] why can't biojava fold RNA? Daniel Quest
  • Re: [Biojava-l] why can't biojava fold RNA? Mark Fortner
  • Re: [Biojava-l] why can't biojava fold RNA? Andreas Prlic
• Re: [Biojava-l] Biojava-l Digest, Vol 104, Issue 6 Khalil El Mazouari
• [Biojava-l] UniprotParser Saif Ur-Rehman
• Re: [Biojava-l] [Biojava-dev] A question about multiple alignment Andreas Prlic
• [Biojava-l] atomcache with a file Jay Vyas
  • Re: [Biojava-l] atomcache with a file Andreas Prlic
  • Re: [Biojava-l] atomcache with a file Jay Vyas
  • Re: [Biojava-l] atomcache with a file Jay Vyas
  • Re: [Biojava-l] atomcache with a file Andreas Prlic
  • Re: [Biojava-l] atomcache with a file Amr AL-Hossary
  • Re: [Biojava-l] atomcache with a file Spencer Bliven
  • Re: [Biojava-l] atomcache with a file Andreas Prlic
  • Re: [Biojava-l] atomcache with a file JAX
  • Re: [Biojava-l] atomcache with a file Daniel Asarnow
• [Biojava-l] Invitation to connect on LinkedIn Indu Pandey
  • [Biojava-l] Invitation to connect on LinkedIn Huijie Qiao via LinkedIn
  • [Biojava-l] Invitation to connect on LinkedIn Huijie Qiao via LinkedIn
  • [Biojava-l] Invitation to connect on LinkedIn Chuan Hock Koh via LinkedIn
  • [Biojava-l] Invitation to connect on LinkedIn Chuan Hock Koh
• [Biojava-l] BioJava 3.0.2 released Andreas Prlic
• [Biojava-l] Work completed for GSoC:AAPropertiesComputation Chuan Hock Koh
  • Re: [Biojava-l] Work completed for GSoC:AAPropertiesComputation Andreas Prlic
  • Re: [Biojava-l] Work completed for GSoC:AAPropertiesComputation Peter Troshin
• [Biojava-l] exception in DisplayAFP.createArtificialStructure Daniel Asarnow
  • Re: [Biojava-l] exception in DisplayAFP.createArtificialStructure Andreas Prlic
  • Re: [Biojava-l] exception in DisplayAFP.createArtificialStructure Daniel Asarnow
  • Re: [Biojava-l] exception in DisplayAFP.createArtificialStructure Andreas Prlic
  • Re: [Biojava-l] exception in DisplayAFP.createArtificialStructure Daniel Asarnow
• [Biojava-l] structure alignment display Daniel Asarnow
  • Re: [Biojava-l] structure alignment display Andreas Prlic
• [Biojava-l] improving biojava documentation Andreas Prlic
• [Biojava-l] bioclojure Jay Vyas
  • Re: [Biojava-l] bioclojure Brad Chapman
  • Re: [Biojava-l] bioclojure Daniel Quest
• [Biojava-l] Job opportunity: User Interface Design and Web Application Developer Hilmar Lapp
• [Biojava-l] ab1 files Trent Schafer
  • Re: [Biojava-l] ab1 files Scooter Willis
  • Re: [Biojava-l] ab1 files Amr AL-Hossary
• [Biojava-l] Invitation for Open Source Project Peter Penzov
• [Biojava-l] NullPointerException Exception While Creating DNA MultipleSequenceAlignment Muhammad Tariq Pervez
  • Re: [Biojava-l] NullPointerException Exception While Creating DNA MultipleSequenceAlignment Scooter Willis
  • Re: [Biojava-l] NullPointerException Exception While Creating DNA MultipleSequenceAlignment Muhammad Tariq Pervez
  • Re: [Biojava-l] NullPointerException Exception While Creating DNA MultipleSequenceAlignment Scooter Willis
  • Re: [Biojava-l] NullPointerException Exception While Creating DNA MultipleSequenceAlignment Muhammad Tariq Pervez
  • Re: [Biojava-l] NullPointerException Exception While Creating DNA MultipleSequenceAlignment Andreas Prlic
• [Biojava-l] maven question Daniel Quest
  • Re: [Biojava-l] maven question Andreas Prlic
  • Re: [Biojava-l] maven question Daniel Quest
  • Re: [Biojava-l] maven question Andreas Prlic
• [Biojava-l] GSoC:AAPropertiesComputation Updates Chuan Hock Koh
  • Re: [Biojava-l] GSoC:AAPropertiesComputation Updates Scooter Willis
• [Biojava-l] Calculating consensus sequence Muhammad Tariq Pervez
• Re: [Biojava-l] Biojava-l Digest, Vol 102, Issue 4 Muhammad Tariq Pervez
• [Biojava-l] Local DB BLAST Comparison/Search Mark Stewart
  • Re: [Biojava-l] Local DB BLAST Comparison/Search Andreas Prlic
• [Biojava-l] Page creation in Biojava Muhammad Tariq Pervez
  • Re: [Biojava-l] Page creation in Biojava Andreas Prlic
  • Re: [Biojava-l] Page creation in Biojava Muhammad Tariq Pervez
  • Re: [Biojava-l] Page creation in Biojava Andreas Prlic
  • Re: [Biojava-l] Page creation in Biojava Muhammad Tariq Pervez
  • Re: [Biojava-l] Page creation in Biojava Andreas Prlic
• [Biojava-l] BioJava Gene Hierarchies Daniel Di Giulio
• [Biojava-l] No. of gaps in aligned sequences Muhammad Tariq Pervez
  • Re: [Biojava-l] No. of gaps in aligned sequences Andreas Prlic
  • Re: [Biojava-l] No. of gaps in aligned sequences Muhammad Tariq Pervez
• [Biojava-l] Help on NCBIQBlastService and BlastXMLQuery Shakuntala Baichoo
  • Re: [Biojava-l] Help on NCBIQBlastService and BlastXMLQuery Sylvain Foisy
• Re: [Biojava-l] Biojava-l Digest, Vol 101, Issue 14 Khalil El Mazouari
• [Biojava-l] make feature to create embl or genbank file Hedwig Kurka
  • Re: [Biojava-l] make feature to create embl or genbank file George Waldon
  • Re: [Biojava-l] make feature to create embl or genbank file Hedwig Kurka
  • Re: [Biojava-l] make feature to create embl or genbank file George Waldon
  • Re: [Biojava-l] make feature to create embl or genbank file Hedwig Kurka
  • Re: [Biojava-l] make feature to create embl or genbank file Richard Holland
• [Biojava-l] Central registration place for BAM, BigBed and BigWig files Jonathan Warren
• [Biojava-l] help with short reads ? Jay Vyas
  • Re: [Biojava-l] help with short reads ? Peter Cock
• [Biojava-l] CEAlign > 0 for exact same structures ? Jay Vyas
  • Re: [Biojava-l] CEAlign > 0 for exact same structures ? Andreas Prlic
• [Biojava-l] Biojava, bio prl bio php bioryby bio python biolisp bioclispse Lic. Marcelo Ignacio Bondi
• Re: [Biojava-l] Find hydrogen bond angle Andreas Prlic
• [Biojava-l] binning structures by quality.... Jay Vyas
  • Re: [Biojava-l] binning structures by quality.... Steve Darnell
• [Biojava-l] Genbank feature parsing performance Khalil El Mazouari
  • Re: [Biojava-l] Genbank feature parsing performance Martin Jones
  • Re: [Biojava-l] Genbank feature parsing performance Khalil El Mazouari
  • Re: [Biojava-l] Genbank feature parsing performance Khalil El Mazouari

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