Hi Andreas and All, On Fri, Aug 03, 2012 at 02:21:01PM -0700, Andreas Prlic wrote: > Hi Jan, > > There is no biosql ORM mapping for biojava 3 currently. If you need > something like that you would need to use biojava 1 or patch biojava > 3...
ok -- so is there any general suggestion / recommendation / best practice for building applications that involve handling annotated sequence data and a web UI? Best regards, Jan > Andreas > > > > On Fri, Aug 3, 2012 at 5:47 AM, Jan T Kim <[email protected]> wrote: > > Dear All, > > > > is there a set of EJB 3 entities that correspond to BioSQL available? > > I've noticed that there are is a Hibernate mapping in biojavax [1, 2] -- > > is that the recommended ORM solution? > > > > Personally, I'd prefer a set of classes, with the suitable annotations > > from the javax.persistence package applied (@Entity, @Id etc.) to match > > the BioSQL tables. > > > > Apparently there have been initiatives in this direction (e.g. [3]), has > > any of these made it into mainstream BioJava? If not, why not? > > > > Best regards, Jan > > > > [1] http://biojava.org/wiki/BioJava:BioJavaXDocs > > [2] http://www.biosql.org/wiki/BioJava_BioSQL_ORM > > [3] http://www.biojava.org/pipermail/biojava-l/2008-October/006387.html > > -- > > +- Jan T. Kim -------------------------------------------------------+ > > | email: [email protected] | > > | WWW: http://www.jtkim.dreamhosters.com/ | > > *-----=< hierarchical systems are for files, not for humans >=-----* > > _______________________________________________ > > Biojava-l mailing list - [email protected] > > http://lists.open-bio.org/mailman/listinfo/biojava-l -- +- Jan T. Kim -------------------------------------------------------+ | email: [email protected] | | WWW: http://www.jtkim.dreamhosters.com/ | *-----=< hierarchical systems are for files, not for humans >=-----* _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
