Dear Mailing-List, I have a problem parsing genbank-files. First: I know my parser works, because I used it several times. But for some files I get the following error:
org.biojava.bio.BioException: Could not read sequence . . . Caused by: org.biojava.bio.seq.io.ParseException: A Exception Has Occurred During Parsing. Please submit the details that follow to [email protected] or post a bug report to http://bugzilla.open-bio.org/ Format_object=org.biojavax.bio.seq.io.GenbankFormat Accession=null Id=null Comments=Bad locus line Parse_block=LOCUS ABCD01000001; 10777 bp linear genomic DNA 23-AUG-2012 Stack trace follows .... at org.biojavax.bio.seq.io.GenbankFormat.readRichSequence(GenbankFormat.java:315) at org.biojavax.bio.seq.io.RichStreamReader.nextRichSequence(RichStreamReader.java:110) ... 3 more The Locus line in the genbank file is the following: LOCUS ABCD01000001; 10777 bp linear genomic DNA 23-AUG-2012 Can you tell me, what Biojava expects in that line or what is too much or missing? I use biojava 1.82 Thanks already for helping. _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
