Hi Amr, This is great! Did you try to load a couple of different files from the Pfam web site? That should be good for testing...
Andreas On Tue, Nov 6, 2012 at 3:11 AM, Amr AL-HOSSARY <[email protected]>wrote: > Dear all, > I added stockholm parser beta to the package "org.biojava3.alignment.io" > of "biojava3-alignment" project.It should be ready on on the latest Biojava > snapshot build after 20 mins. > As stockholm format structure is not well defined (at least in contrast to > PDB), Not all of the features are well implemented yet.Please test it > against different files you have, and feed me back; so that I start with > the most important/most used features first. > Thanks to Marko Vas for his code base. I built on his code and that saved > a lot of unnecessary time. > > > Best Regards, > > > Amr AL-HOSSARY > > > > > > > > > > Amr Ali AL-HOSSARY | > Ph.D. Student | > International PhD program in Computational Biology and Bioinformatics | > School of Computer Engineering | > Nanyang Technological University | > Singapore | > Email: [email protected] > | > > > > > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > > -- ----------------------------------------------------------------------- Dr. Andreas Prlic Senior Scientist, RCSB PDB Protein Data Bank University of California, San Diego (+1) 858.246.0526 ----------------------------------------------------------------------- _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
