Hey Janier, Sorry no one responded to your last question. Biojava doesn't currently do full-blown assembly, although the basic pairwise alignment algorithms are there.
I've never used AMOScmp myself, and so can't advise you on your problem. -Spencer On Mon, May 6, 2013 at 6:41 PM, Janier J. Ramírez < [email protected]> wrote: > Hi ! > I'm interested in the reference based assemblies using AMOScmp, I used > tarchive2Amos to obtain the .afg file an I have the reference (.fasta > file), but the problem is that the output files (.fasta and .contig) are > empty. In the log files there is a WARNING which says that the file FRG.ifo > was not found and could not retrieve mate pairs information. > This is very important to me and won't have many time for that. > > Please any sugestion for this proble ? > > Thanks in advance > > -- > > > Universidad de las Ciencias Informáticas > Janier J. Ramírez Landaburo > Facultad - 6 > Tel-837-3121 > http://www.uci.cu > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
