Janier, Biojava 1 is only receiving bug fixes currently. There are a couple changes since 1.8.2, which can be incorporated by using the 1.8.3-SNAPSHOT from the maven repository. There is no release date for 3.0.6 yet, but again you can use the latest SNAPSHOT from maven if you need new features.
-Spencer On Tue, May 7, 2013 at 12:31 PM, Janier J. Ramírez < [email protected]> wrote: > When Biojaba 1.8.3 will be released ? > > cheers > > > ----- Mensaje original ----- > De: "Spencer Bliven" <[email protected]> > Para: "Janier J. Ramírez" <[email protected]> > CC: "[email protected]" <[email protected]> > Enviados: Martes, 7 de Mayo 2013 21:00:44 > Asunto: Re: [Biojava-l] AMOScmp problem > > > > > Hey Janier, > > Sorry no one responded to your last question. Biojava doesn't currently do > full-blown assembly, although the basic pairwise alignment algorithms are > there. > > I've never used AMOScmp myself, and so can't advise you on your problem. > > -Spencer > > > > > On Mon, May 6, 2013 at 6:41 PM, Janier J. Ramírez < > [email protected] > wrote: > > > Hi ! > I'm interested in the reference based assemblies using AMOScmp, I used > tarchive2Amos to obtain the .afg file an I have the reference (.fasta > file), but the problem is that the output files (.fasta and .contig) are > empty. In the log files there is a WARNING which says that the file FRG.ifo > was not found and could not retrieve mate pairs information. > This is very important to me and won't have many time for that. > > Please any sugestion for this proble ? > > Thanks in advance > > -- > > > Universidad de las Ciencias Informáticas > Janier J. Ramírez Landaburo > Facultad - 6 > Tel-837-3121 > http://www.uci.cu > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > > http://www.uci.cu > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
