Hi all,
I prefer to do Java Programming in bioinformatics, but I cannot build
the examples from
the BioJava:Cookbook:SeqIO:ABItoSequence - Examples from
http://biojava.org/wiki/BioJava:Cookbook:SeqIO:ABItoSequence.
I used maven in Eclipse IDE for Java Developers Version: Kepler Service
Release 2 Build id: 20140224-0627
with
M2E - Maven Integration for Eclipse
I tried both examples with Biojava 1.8.5 using the pom.xml as follows,
but both examples gave failure with
import org.biojava.bio.chromatogram.*;
using the Chromatogram and ChromatogramFactory classes
and
import org.biojava.bio.program.abi.*;
using the ABITrace class.
both packages and classes are described in the API.
What is going wrong ? Any idea and help.
Many thanks
Detlef
<project xmlns="http://maven.apache.org/POM/4.0.0";
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/xsd/maven-4.0.0.xsd";>
<modelVersion>4.0.0</modelVersion>
<groupId>IGVScreenShots</groupId>
<artifactId>IGVScreenShots</artifactId>
<version>0.0.1-SNAPSHOT</version>
<build>
<sourceDirectory>src</sourceDirectory>
<plugins>
<plugin>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.1</version>
<configuration>
<source />
<target />
</configuration>
</plugin>
</plugins>
</build>
<repositories>
<repository>
<id>biojava-maven-repo</id>
<name>BioJava repository</name>
<url>http://www.biojava.org/download/maven/</url>
</repository>
</repositories>
<dependencies>
<dependency>
<groupId>org.biojava</groupId>
<artifactId>core</artifactId>
<version>1.8.5</version>
</dependency>
</dependencies>
</project>
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