Hi Detlef, did you try running an initial "mvn install" on your setup? That might be required for a first download of the jar files into your setup.
Andreas On Mon, Jun 9, 2014 at 3:20 PM, Detlef Boehm <[email protected]> wrote: > Hi all, > > I prefer to do Java Programming in bioinformatics, but I cannot build the > examples from > the BioJava:Cookbook:SeqIO:ABItoSequence - Examples from > http://biojava.org/wiki/BioJava:Cookbook:SeqIO:ABItoSequence. > > I used maven in Eclipse IDE for Java Developers Version: Kepler Service > Release 2 Build id: 20140224-0627 > with > M2E - Maven Integration for Eclipse > > I tried both examples with Biojava 1.8.5 using the pom.xml as follows, but > both examples gave failure with > import org.biojava.bio.chromatogram.*; > using the Chromatogram and ChromatogramFactory classes > > and > import org.biojava.bio.program.abi.*; > using the ABITrace class. > > both packages and classes are described in the API. > > What is going wrong ? Any idea and help. > > Many thanks > Detlef > > > <project xmlns="http://maven.apache.org/POM/4.0.0"; xmlns:xsi=" > http://www.w3.org/2001/XMLSchema-instance"; > xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 > http://maven.apache.org/xsd/maven-4.0.0.xsd";> > <modelVersion>4.0.0</modelVersion> > <groupId>IGVScreenShots</groupId> > <artifactId>IGVScreenShots</artifactId> > <version>0.0.1-SNAPSHOT</version> > <build> > <sourceDirectory>src</sourceDirectory> > <plugins> > <plugin> > <artifactId>maven-compiler-plugin</artifactId> > <version>3.1</version> > <configuration> > <source /> > <target /> > </configuration> > </plugin> > </plugins> > </build> > <repositories> > <repository> > <id>biojava-maven-repo</id> > <name>BioJava repository</name> > <url>http://www.biojava.org/download/maven/</url> > </repository> > </repositories> > <dependencies> > > <dependency> > <groupId>org.biojava</groupId> > <artifactId>core</artifactId> > <version>1.8.5</version> > </dependency> > </dependencies> > </project> > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
