Andreas Tille pushed to branch master at Debian Blends Team / med
Commits:
8a13316b by Andreas Tille at 2020-05-25T17:19:17+02:00
More conda ids in Debian upstream metadata
- - - - -
1 changed file:
- covid-19_doc/bio_covid-19_dependencies_result
Changes:
=====================================
covid-19_doc/bio_covid-19_dependencies_result
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sun, 24 May 2020 19:37:02 +0200
+Last-Update: Mon, 25 May 2020 17:17:42 +0200
package | architectures | section |
releases | conda | bio.tools
-----------------------------+---------------------+----------+---------------------------------------------+--------------------------+--------------
@@ -21,39 +21,39 @@ Last-Update: Sun, 24 May 2020 19:37:02 +0200
fastqc | all | main |
buster,bullseye,sid | fastqc | FastQC
filtlong | amd64,arm64,ppc64el | main | bullseye,sid
| filtlong |
freebayes | amd64,arm64,ppc64el | main |
buster,bullseye,sid | freebayes |
freebayes
- gatk | | |
https://salsa.debian.org/med-team/gatk | |
- graphmap2 | | |
https://salsa.debian.org/med-team/graphmap2 | |
+ gatk | | |
https://salsa.debian.org/med-team/gatk | gatk4 |
+ graphmap2 | | |
https://salsa.debian.org/med-team/graphmap2 | graphmap |
ivar | | | new
| ivar |
kallisto | amd64,arm64,ppc64el | main | bullseye,sid
| kallisto | kallisto
kraken2 | amd64,arm64,ppc64el | main | bullseye,sid
| kraken2 | kraken
libhts-dev | amd64,arm64,ppc64el | main |
buster,bullseye,sid | htslib |
lumpy | | |
| |
manta | | |
https://salsa.debian.org/med-team/manta | manta |
- megahit | | | new
| |
+ megahit | | | new
| megahit |
metabat | | |
| |
- minia | amd64,arm64,ppc64el | main |
buster,bullseye,sid | | minia
+ minia | amd64,arm64,ppc64el | main |
buster,bullseye,sid | minia | minia
minimap2 | amd64,arm64,ppc64el | main |
buster,bullseye,sid | minimap2 |
multiqc | all | main | bullseye,sid
| multiqc | multiqc
muscle | amd64,arm64,ppc64el | main |
buster,bullseye,sid | muscle | MUSCLE
- nanolyse | | |
https://salsa.debian.org/med-team/nanolyse | |
- nanoplot | | |
https://salsa.debian.org/med-team/nanoplot | |
+ nanolyse | | |
https://salsa.debian.org/med-team/nanolyse | nanolyse |
+ nanoplot | | |
https://salsa.debian.org/med-team/nanoplot | nanoplot |
ncbi-blast+ | amd64,arm64,ppc64el | main |
buster,bullseye,sid | blast | blast
nextflow | | |
https://salsa.debian.org/med-team/nextflow | |
nf-core | | |
| |
parallel-fastq-dump | all | main | sid
| parallel-fastq-dump |
picard-tools | amd64 | main |
buster,bullseye,sid | picard |
Picard_tools
- porechop | amd64,arm64,ppc64el | main |
buster,bullseye,sid | |
+ porechop | amd64,arm64,ppc64el | main |
buster,bullseye,sid | porechop |
presto | | |
| |
- prodigal | amd64,arm64,ppc64el | main |
buster,bullseye,sid | |
- pycoqc | all | main | bullseye,sid
| |
+ prodigal | amd64,arm64,ppc64el | main |
buster,bullseye,sid | prodigal |
+ pycoqc | all | main | bullseye,sid
| pycoqc |
python3-biopython | amd64,arm64,ppc64el | main |
buster,bullseye,sid | |
Biopython
python3-deeptools | all | main | bullseye,sid
| deeptools | deeptools
- python3-htseq | amd64,arm64,ppc64el | main |
buster,bullseye,sid | | htseq
+ python3-htseq | amd64,arm64,ppc64el | main |
buster,bullseye,sid | htseq | htseq
python3-numpy | amd64,arm64,ppc64el | main |
buster,bullseye,sid | |
python3-pandas | all | main |
buster,bullseye,sid | |
- qcat | all | main | bullseye,sid
| |
- qualimap | | |
https://salsa.debian.org/med-team/qualimap | |
- quast | | |
https://salsa.debian.org/med-team/quast | |
+ qcat | all | main | bullseye,sid
| qcat |
+ qualimap | | |
https://salsa.debian.org/med-team/qualimap | qualimap |
+ quast | | |
https://salsa.debian.org/med-team/quast | quast |
radiant | all | main |
buster,bullseye,sid | | krona
r-bioc-deseq2 | amd64,arm64,ppc64el | main |
buster,bullseye,sid | bioconductor-deseq2 | deseq2
r-bioc-rtracklayer | amd64,arm64,ppc64el | main |
buster,bullseye,sid | bioconductor-rtracklayer |
rtracklayer
@@ -93,6 +93,6 @@ Last-Update: Sun, 24 May 2020 19:37:02 +0200
varscan | amd64 | non-free |
buster,bullseye,sid | varscan | varscan
vcftools | amd64,arm64,ppc64el | main |
buster,bullseye,sid | vcftools |
vcftools
vep | | |
| |
- vg | amd64 | main | bullseye,sid
| |
+ vg | amd64 | main | bullseye,sid
| vg |
(92 Zeilen)
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/commit/8a13316b9a196ec2b7ed54556a8491db108e8373
--
View it on GitLab:
https://salsa.debian.org/blends-team/med/-/commit/8a13316b9a196ec2b7ed54556a8491db108e8373
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