Andreas Tille pushed to branch master at Debian Blends Team / med
Commits: 05a1613a by Andreas Tille at 2020-05-25T22:56:30+02:00 umap-learn - - - - - 8495d3b9 by Andreas Tille at 2020-05-26T11:55:32+02:00 flash was added to https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit?ts=5eb957ba#gid=543782716 - - - - - e9fcb6db by Andreas Tille at 2020-05-26T13:00:17+02:00 Recommends: flash - - - - - 3 changed files: - covid-19_doc/bio_covid-19_dependencies_query - tasks/bio - tasks/covid-19 Changes: ===================================== covid-19_doc/bio_covid-19_dependencies_query ===================================== @@ -90,6 +90,7 @@ INSERT INTO covid19_packages VALUES ('fastp'), ('fastqc'), ('filtlong'), +('flash'), ('freebayes'), ('gatk'), ('graphmap2'), @@ -153,6 +154,7 @@ INSERT INTO covid19_packages VALUES ('strelka'), ('tiddit'), ('trim-galore'), +('umap-learn'), ('unicycler'), ('varscan'), ('vcftools'), ===================================== tasks/bio ===================================== @@ -601,6 +601,8 @@ Recommends: fastqc Recommends: fastqtl +Recommends: flash + Recommends: ffp Recommends: fieldbioinformatics @@ -1297,6 +1299,8 @@ Recommends: trinityrnaseq Recommends: uc-echo X-Category: NGS +Recommends: umap-learn + Recommends: umis Recommends: unanimity ===================================== tasks/covid-19 ===================================== @@ -163,6 +163,8 @@ Recommends: strelka Recommends: tiddit +Recommends: umap-learn + Recommends: vep X-Comment: FIXME: Please confirm that you mean Homepage: https://github.com/Ensembl/ensembl-vep @@ -204,6 +206,10 @@ Recommends: seqwish Recommends: vsearch +X-Comment: https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit?ts=5eb957ba#gid=543782716 + +Recommends: flash + X-Comment: </Jun_Aruga> X-Comment: TODO: Check out View it on GitLab: https://salsa.debian.org/blends-team/med/-/compare/8a13316b9a196ec2b7ed54556a8491db108e8373...e9fcb6dbfb3cf5a63d542c2ae16e47fbe04446d5 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/compare/8a13316b9a196ec2b7ed54556a8491db108e8373...e9fcb6dbfb3cf5a63d542c2ae16e47fbe04446d5 You're receiving this email because of your account on salsa.debian.org.
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