On Sep 14, 2007, at 5:47 PM, Geoffrey Hutchison wrote:

>> Basically this means there is no clear resolution to the issue of  
>> smi23d and patents.
> ...
>> Sheesh, and all we did was implement an algorithm from a paper :(
>
> Yes, I know the feeling. This is why so many people are against  
> software patents. Of course the situation is not much better in wet  
> chemistry -- someone can patent a process and then publish it. You  
> can certainly repeat the published procedure, but the end result is  
> still covered by patent. (Thus the problem with generic drugs and  
> patents.)
>
> I think Noel's discovery of RD-Kit and their 3D coordinate  
> generation may make this point moot.

Right

> We'll get there -- and who knows, maybe they will clear the patent  
> for open source use. It shouldn't affect the commercial side of  
> their patent.

We may just pull out the SPE code and replace it with distance  
geometry. A pity since SPE is a really elegant algorithm.

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Rajarshi Guha  <[EMAIL PROTECTED]>
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Enzymes are things invented by biologists that explain things which
otherwise require harder thinking.
        -- Jerome Lettvin



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