Peter, On Tue, Mar 8, 2016 at 7:43 PM, Peter Murray-Rust <pm...@cam.ac.uk> wrote: > I am now enhancing contentmine.org to search the daily literature and need > dictionaries to match names. I don't mind false negatives so am simply > matching names, but they should have identifiers. > > The format would simply be: > name="ethyl acetate" id="a123"
For WikiPathways were use BridgeDb, and I take care of the metabolite identifier mapping database, which includes names and synonyms. The latest BridgeDb file is at Figshare [0], but I guess you want to above format, right? But which identifier do you want? Any? Does the name come from the database matching the identifier? I have been using HMDB, ChEBI, and since almost a year Wikidata... Egon 0.https://figshare.com/articles/Metabolite_BridgeDb_ID_Mapping_Database_20160113_/3083842/1 -- E.L. Willighagen Department of Bioinformatics - BiGCaT Maastricht University (http://www.bigcat.unimaas.nl/) Homepage: http://egonw.github.com/ LinkedIn: http://se.linkedin.com/in/egonw Blog: http://chem-bla-ics.blogspot.com/ PubList: http://www.citeulike.org/user/egonw/tag/papers ORCID: 0000-0001-7542-0286 ImpactStory: https://impactstory.org/EgonWillighagen ------------------------------------------------------------------------------ Transform Data into Opportunity. Accelerate data analysis in your applications with Intel Data Analytics Acceleration Library. Click to learn more. http://pubads.g.doubleclick.net/gampad/clk?id=278785111&iu=/4140 _______________________________________________ Blueobelisk-discuss mailing list Blueobelisk-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/blueobelisk-discuss
