This paper (pdf) shows how MOG (Modified Gravity or
Scalar-Tensor-Vector) theory explains the Bullet cluster 'proof' of dark
matter without dark matter:
http://arxiv.org/abs/astro-ph/0702146
This article argues, weakly, that the apparent acceleration of the
universe can be explained without Dark energy (and they hope to refine
their theory more and produce some testable predictions):
http://seedmagazine.com/content/article/erasing_dark_energy/
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