Hi Dr. Smiley,
If the files are numbered like 00001.tif, 00002.tif, ..., 00099.tif,
then you can do this on the command line:
cat *tif > my_monkey.raw
Then, you can import monkey.raw as a Raw Volume file. You'll need to
know the dimensions (z will be # of tif files) an the datum type.
You'll be able to view this volume in Caret, but if you want to generate
a 3d surface from the anatomical volume, you'll need to do this in
SureFit, which is not available on MacOSX yet.
If these tiff files are, say, histological sections rather than MRI
scans, then have a look at Caret 4.6 tutorial 10
(http://brainmap.wustl.edu/caret/pdf/CARET_UsersGuide.03-06.Part-II.pdf).
We haven't yet generated a Caret 5.1 version of this tutorial, but I
believe the same functions are available in Caret 5.1.
Donna
On 02/21/2005 10:14 AM, Smiley, John wrote:
Hi:
I'm newly using Caret on Macintosh OSX. I would like to import a 3d volume
(monkey brain) that is in a stack of consecutive Tiff files. Could someone
suggest a way to reformat these images for importation into Caret?
Thanks,
John Smiley
---
John Smiley, Ph.D.
Program in Cognitive Neuroscience and Schizophrenia
Nathan Kline Institute for Psychiatric Research
Orangeburg, NY
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