Alex and John,
While I think it might be useful to have a command line equivalent of
the "Generate inflated, ellipsoid, etc. from fiducial" for other reasons
(to be explained in a later message to caret-users), I don't think this
is necessary for your purposes. I'll explain further in a reply to your
off-list message.
Donna
On 02/16/2006 12:04 AM, Fornito, Alexander wrote:
That did the trick. Thanks John.
I've noticed that caret_file_convert can be used to convert functional files to
metric files.
Can it be used for converting Caret paint files into freesurfer label files? I
couldn't see if any flags that might indicate so.
Also, are there any command line utilites for inflating a surface?
Thanks again,
Alex
Alex Fornito
M.Psych/PhD (clin. neuro.) candidate
Melbourne Neuropsychiatry Centre and Department of Psychology
The University of Melbourne
[EMAIL PROTECTED]
-----Original Message-----
From: [EMAIL PROTECTED] on behalf of John Harwell
Sent: Thu 16/02/2006 1:36 AM
To: Caret, SureFit, and SuMS software users
Subject: Re: [caret-users] Viewing ROIs
Alex,
Yes, it is possible to export paint data into free surfer label
files. Choose "Export File" from the File Menu. On the Export Data
File dialog, set the File Type to "Free Surfer Ascii Label File as
Paint (*.label)". At the bottom of the dialog is a section titled
"Export Selections" that allows selection of a surface. For an
unknown reason, Free Surfer also stores coordinates in the label
file. Enter a name for the file name but be aware that this file
name is not used. After pressing the OK button, you will be asked to
choose the Paint File Column that is to be exported. Select the
column and press the OK button. For each name in the paint column, a
label file will be created. For instance if the paint column
contains nodes identified as SULCAL and GYRAL, two label files will
be created, SULCAL.label and GYRAL.label.
----------------------------------------------------------
John Harwell
[EMAIL PROTECTED]
314-362-3467
Department of Anatomy and Neurobiology
Washington University School of Medicine
660 S. Euclid Ave. Box 8108
St. Louis, MO 63110 USA
On Feb 14, 2006, at 11:34 PM, Fornito, Alexander wrote:
Thanks for the tip.
On another issue; I've noticed its possible to import freesurfer
label files into Caret. Is it possible to do the reverse, i.e.,
export a paint file as a freesurfer label file?
Thanks,
Alex
Alex Fornito
M.Psych/PhD (clin. neuro.) candidate
Melbourne Neuropsychiatry Centre and Department of Psychology
The University of Melbourne
[EMAIL PROTECTED]
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