On 04/18/2006 03:50 PM, Jason D Connolly wrote:
Dear David and Donna,
I re-ran the left hemisphere deformation and I noticed that the deformed
flat maps look alright. It is only the fiducial, inflated and spheres
that are black.
Make a "fordonna" subdirectory and use Copy Spec file to copy the spec
file you are viewing to that subdirectory. Then, create a zip or tar.gz
archive of that subdirectory and upload it here:
http://pulvinar.wustl.edu/cgi-bin/upload.cgi
I need to know exactly which CLOSED topo and fiducial, inflated, and
spherical coord files you have loaded. Make sure only one CLOSED topo
file is loaded.
I also noticed that when the spherical deformation is run, the central
sulcus appears on the right side and the medial wall on the left during
warping.
This is normal. During registration, left hemispheres are flipped and
treated as if they were right hemispheres. This is normal behavior and
causes no problems.
Following deformation there are 2 sets of borders that appear
on the spheres the "left" set and also concurrently a "right" (or
perhaps target) set. The two sets are overlaid on the spheres.
Sounds to me like you have the target border file
Human_PALS_B12.LR.MEN_WOMEN.AVG-LANDMARKS_Core6.SPHERE.border selected.
I'm still in the dark as to what your goal is -- the type of data you're
trying to register to PALS (e.g., sulcal depth? functional data?).
Jason.
------------------------------------------------------------
Jason D. Connolly, PhD
Center for Neural Science, New York University
6 Washington Place Room 875, New York, NY 10003
cell:646.417.2937 lab:212.998.8347 fax:212.995.4562
http://www.psych.nyu.edu/curtislab/people/jasonconnolly.html
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--
Donna L. Dierker
(Formerly Donna Hanlon; no change in marital status -- see
http://home.att.net/~donna.hanlon for details.)
