Hi Donna, As soon as I put the correct file locations in the deform_map file the deformation (macaque to Colin) worked fine. I imagine the same will be true in going from Colin to the PALS atlas. Thanks!
Terry ----- Original Message ----- From: <[EMAIL PROTECTED]> To: <caret-users@brainvis.wustl.edu> Sent: Friday, May 12, 2006 11:00 AM Subject: caret-users Digest, Vol 32, Issue 7 > Send caret-users mailing list submissions to > caret-users@brainvis.wustl.edu > > To subscribe or unsubscribe via the World Wide Web, visit > http://pulvinar.wustl.edu/mailman/listinfo/caret-users > or, via email, send a message with subject or body 'help' to > [EMAIL PROTECTED] > > You can reach the person managing the list at > [EMAIL PROTECTED] > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of caret-users digest..." > > > Today's Topics: > > 1. Re: Deforming borderprojection files (Terry Sewards) > 2. Re: Re: Deforming borderprojection files (Donna Dierker) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Fri, 12 May 2006 09:48:24 -0600 > From: "Terry Sewards" <[EMAIL PROTECTED]> > Subject: [caret-users] Re: Deforming borderprojection files > To: <caret-users@brainvis.wustl.edu> > Message-ID: <[EMAIL PROTECTED]> > Content-Type: text/plain; charset="iso-8859-1" > > Hi, > > I've been trying to deform *.borderproj files from the PALS Atlas to the > Macaque Atlas (and vice versa), but I'm having trouble figuring out the > procedures involved. Do I have to deform to the Colin atlas first, and how > is this done? Does it require flat surface deformation, and if so is there > a goaround for the Windows version? Thanks in advance. > > Terry Sewards > > > ------------------------------ > > Message: 2 > Date: Fri, 12 May 2006 11:54:01 -0500 > From: Donna Dierker <[EMAIL PROTECTED]> > Subject: Re: [caret-users] Re: Deforming borderprojection files > To: "Caret, SureFit, and SuMS software users" > <caret-users@brainvis.wustl.edu> > Message-ID: <[EMAIL PROTECTED]> > Content-Type: text/plain; charset=ISO-8859-1; format=flowed > > Hi Terry, > > You're in territory I fear to tread. I've never done a cross-species > registration myself, but in theory it's doable. Like you, I'm guessing > the route from PALS_B12 to F99UA1 will be through Colin. If you search > http://sumsdb.wustl.edu/sums/index.jsp for filename F99UA1 and file type > deform_map, the most recent entries are from 2004 (probably the Denys > and Orban papers), which used colin for the human target. > > There are Colin <-> PALS_B12 deform_maps in sumsdb, so you could deform > a file in two steps: Once from PALS to colin, then from colin to > F99UA1. Once you get the deformation maps, then you can use Surface: > Deformation: Apply Deformation Map on your borderproj file. You'll have > to change the source and target directories, since they won't match your > file system pathnames. > > Flat registration shouldn't be required; in fact, registration shouldn't > be required. It's just a matter of hunting down the right deform_map > files in sumsdb; making sure you have all the F99UA1, Colin, and > PALS_B12 files those deform_map files need; and applying them in the > right polarity/sequence. > > Give it a go on your own, and if you get stuck, let us know. David's > the real cross-species expert (hope that doesn't come off wrong), but > he's in Seattle and heads to Japan next week. > > On 05/12/2006 10:48 AM, Terry Sewards wrote: > > >Hi, > > > >I've been trying to deform *.borderproj files from the PALS Atlas to the > >Macaque Atlas (and vice versa), but I'm having trouble figuring out the > >procedures involved. Do I have to deform to the Colin atlas first, and how > >is this done? Does it require flat surface deformation, and if so is there > >a goaround for the Windows version? Thanks in advance. > > > >Terry Sewards > > > >_______________________________________________ > >caret-users mailing list > >caret-users@brainvis.wustl.edu > >http://pulvinar.wustl.edu/mailman/listinfo/caret-users > > > > > > > > > -- > Donna L. Dierker > (Formerly Donna Hanlon; no change in marital status -- see http://home.att.net/~donna.hanlon for details.) > > > ------------------------------ > > _______________________________________________ > caret-users mailing list > caret-users@brainvis.wustl.edu > http://pulvinar.wustl.edu/mailman/listinfo/caret-users > > > End of caret-users Digest, Vol 32, Issue 7 > ****************************************** >
