Hi Gene,
It might take you 15 minutes to wade through this whole thread, but it
will resonate:
http://www.mail-archive.com/[email protected]/msg01088.html
Here are the highlights:
* Caret only reads NIFTI files that are a single file with the ".nii"
extension. The next release of Caret will be able to read NIFTI files
that are in an Analyze hdr/img pair. Caret still reads the files as if
they were Analyze, but without the SPM99/SPM2-style "originator" info in
the .hdr, it's clueless about the location of the origin.
* Use Volume: Edit volume attributes to set the origin to -90,-126,-72.
* When opening the functional volume in Caret, select the "Volume is an
SPM2 Volume with Right on Left" if your volume is stored in a
left-handed coordinate system (aka radilogical or right on left -- see
http://nifti.nimh.nih.gov/nifti-1/documentation/faq#Q15). If you need
to map several functional volumes and want to use the caret_map_fmri
command line utility, then you'll probably need to convert your volumes
to *.nii, AFNI, or SPM2-style .hdr.
Donna
On 04/11/2007 07:50 AM, Eugene Tunik wrote:
Dear all,
I am mapping a contrast image (the spmT.hdr/img) that is output in SPM5.
However, Caret is not mapping it to the fiducial. This works fine using an spmT
image output from SPM2.
Is there something special about the SPM5 output that makes it incompatible
with caret?
Any suggestions are appreciated.
Best,
Gene
Eugene Tunik, PhD, PT
Dept. of Physical Therapy, NYU
http://homepages.nyu.edu/~et38/
_______________________________________________
caret-users mailing list
[email protected]
http://pulvinar.wustl.edu/mailman/listinfo/caret-users
--
Donna L. Dierker
(Formerly Donna Hanlon; no change in marital status -- see
http://home.att.net/~donna.hanlon for details.)
