Hi Mateus,
Wasn't SPM96 the single subject colin target? I'm asking, because I
really don't know the answer, but I think David may have told me this
while working on his foci project.
It turns out my caret/data_files/fmri_mapping_files directory *does*
have AVERAGE-FIDUCIAL_SPM95 and AVERAGE-FIDUCIAL_SPM96 spec files that
almost certainly have to do with David's foci project. Your version may
be older and not yet have these files. But a worthwhile task might be
to do this:
cd /usr/local/caret/data_files/fmri_mapping_files
caret5
Then, open whichever of these specs you think has the best chance of
aligning:
Human.PALS_B12.LR.AVERAGE-FIDUCIAL_SPM95.LEFT.73730.spec
Human.PALS_B12.LR.AVERAGE-FIDUCIAL_SPM96.LEFT.73730.spec
Human.colin.SPM2.LEFT.71785.spec
Human.colin.SPM99.LEFT.71785.spec
Human.PALS_B12.LR.MULTI-FIDUCIAL_FLIRT_fMRI-MAPPER.B1-12.LEFT.73730.spec
Human.PALS_B12.LR.MULTI-FIDUCIAL_MRITOTAL_fMRI-MAPPER.B1-12.LEFT.73730.spec
Human.PALS_B12.LR.MULTI-FIDUCIAL_SPM2_fMRI-MAPPER.B1-12.LEFT.73730.spec
Human.PALS_B12.LR.MULTI-FIDUCIAL_SPM99_fMRI-MAPPER.B1-12.LEFT.73730.spec
Then File: Open Data File: Volume anatomy file: and open your Marseille
template
Switch to volume view ALL
D/C: overlay/underlay volume: settings: Toggle on Show surface contour
checkbox
Scroll around and evaluate how well the fiducial contour intersects the
surface
Perhaps even get a capture, if the alignment is excellent, and use this
as your reason for using this target. If none align well, then I don't
have a good plan B for you.
Donna
On 04/26/2007 05:15 AM, Mateus Joffily wrote:
Hello,
We have 18 subjects that have been analysed with spm99. Their
structural images have been normalized into a template from Marseille
(http://irmfmrs.free.fr/formation/traitement_des_donnees/GuideSPM.htm)
in MNI space.
Since, we didn't use spm99 standard template, I am not sure we can use
Human.PALS_B12.LR.MULTI-FIDUCIAL_SPM99_fMRI-MAPPER.B1-12.LEFT.73730.spec
for projecting the metrics. What would be the correct way of
projecting the metric files of those subjects into a Caret/PALS surface?
Is there a Human.PALS_B12.LR.AVERAGE-FIDUCIAL_SPM96.RIGHT.73730.spec
for spm99?
Thank you for your help.
Mateus
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