Hi Julie, "caret_map_fmri" is a program that was eliminated several years ago. Make sure you have the latest version of Caret, 5.613.
In place of "caret_map_fmri" use "caret_command -volume-map-to-surface". Try: caret_command -volume-map-to-surface \ /mrt/Visac/01Visac/Anatomy/seg/Human.01Visac.R.Fiducial.65366.coord \ /mrt/Visac/01Visac/Anatomy/seg/Human.01Visac.R.CLOSED.65366.topo \ "" \ <== This is the name of an input metric file to which data is appended. An empty name (two double quotes) means create a new metric file. Rtest.metric \ METRIC_ENCLOSING_VOXEL \ cCue_EndoLeft.hdr John Harwell On Mar 26, 2010, at 9:28 AM, Julia Bender wrote: > > > Hi, > > I'm having trouble using caret_map_fmri. I'm running: > > caret_map_fmri -m Rtest.metric -s > /mrt/Visac/01Visac/Anatomy/seg/Human.01Visac.R.spec > /mrt/Visac/01Visac/Anatomy/seg/Human.01Visac.R.CLOSED.65366.topo > /mrt/Visac/01Visac/Anatomy/seg/Human.01Visac.R.Fiducial.65366.coord -v > cCue_EndoLeft.hdr > > I get: > Unrecognized preferences data type > BINARY:BINARY:BINARY:BINARY:BINARY:BINARY:BINARY > ERROR: Error cCue_EndoLeft.hdr: No such file or directory > > I'm running the command in the directory where my statistical maps (e.g. > cCue_EndoLeft.hdr) for this subject are and I have full permission on all > files. > > I'm using caret (current release) on a linux machine (openSUSE 11.2).Does > anyone have an idea what could be wrong? > > > Thanks a lot! > > Julia > > > > Dipl. Psych. Julia Bender > Humboldt Universität zu Berlin > Mathematisch - Naturwissenschaftliche Fakultät II > Institut für Psychologie, Abt. Klinische Psychologie > Unter den Linden 6 > D-10099 Berlin > > > > Dipl. Psych. Julia Bender > Humboldt Universität zu Berlin > Mathematisch - Naturwissenschaftliche Fakultät II > Institut für Psychologie, Abt. Klinische Psychologie > Unter den Linden 6 > D-10099 Berlin > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
