Hi John, everything worked well with the script you sent me, thanks! I have another question: Has the caret_command "-surface-deformation-apply" also been replaced? I'm trying to run an older script that's calling this line, but I get "command not found" when I run it now. I also could'nt find it when I looked up all arguments under 'caret_commands -help'
thanks a lot! Julia > Hi Julie, > > "caret_map_fmri" is a program that was eliminated several years ago. Make > sure you have the latest version of Caret, 5.613. > > In place of "caret_map_fmri" use "caret_command -volume-map-to-surface". > > Try: > > caret_command -volume-map-to-surface \ > /mrt/Visac/01Visac/Anatomy/seg/Human.01Visac.R.Fiducial.65366.coord \ > /mrt/Visac/01Visac/Anatomy/seg/Human.01Visac.R.CLOSED.65366.topo \ > "" \ <== This is the name of an input metric file to > which data is appended. An empty name (two double quotes) means create > a new metric file. > Rtest.metric \ > METRIC_ENCLOSING_VOXEL \ > cCue_EndoLeft.hdr > > > John Harwell > > > On Mar 26, 2010, at 9:28 AM, Julia Bender wrote: > >> >> >> Hi, >> >> I'm having trouble using caret_map_fmri. I'm running: >> >> caret_map_fmri -m Rtest.metric -s >> /mrt/Visac/01Visac/Anatomy/seg/Human.01Visac.R.spec >> /mrt/Visac/01Visac/Anatomy/seg/Human.01Visac.R.CLOSED.65366.topo >> /mrt/Visac/01Visac/Anatomy/seg/Human.01Visac.R.Fiducial.65366.coord -v >> cCue_EndoLeft.hdr >> >> I get: >> Unrecognized preferences data type >> BINARY:BINARY:BINARY:BINARY:BINARY:BINARY:BINARY >> ERROR: Error cCue_EndoLeft.hdr: No such file or directory >> >> I'm running the command in the directory where my statistical maps (e.g. >> cCue_EndoLeft.hdr) for this subject are and I have full permission on >> all >> files. >> >> I'm using caret (current release) on a linux machine (openSUSE >> 11.2).Does >> anyone have an idea what could be wrong? >> >> >> Thanks a lot! >> >> Julia >> >> >> >> Dipl. Psych. Julia Bender >> Humboldt Universität zu Berlin >> Mathematisch - Naturwissenschaftliche Fakultät II >> Institut für Psychologie, Abt. Klinische Psychologie >> Unter den Linden 6 >> D-10099 Berlin >> >> >> >> Dipl. Psych. Julia Bender >> Humboldt Universität zu Berlin >> Mathematisch - Naturwissenschaftliche Fakultät II >> Institut für Psychologie, Abt. Klinische Psychologie >> Unter den Linden 6 >> D-10099 Berlin >> >> _______________________________________________ >> caret-users mailing list >> [email protected] >> http://brainvis.wustl.edu/mailman/listinfo/caret-users >> > > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > Dipl. Psych. Julia Bender Humboldt Universität zu Berlin Mathematisch - Naturwissenschaftliche Fakultät II Institut für Psychologie, Abt. Klinische Psychologie Unter den Linden 6 D-10099 Berlin _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
