Hi R Matthew, Have a look at this:
http://brainvis.wustl.edu/wiki/index.php/Caret:Operations/MapVolumeToSurface ... and also this: CARET_TUTORIAL_SEPT-06 http://sumsdb.wustl.edu/sums/directory.do?id=6585200 ... specifically section 5.1, page 67. For space, select FLIRT instead of 711-2C. Assuming your FEAT output is registered to avg152, this should work. Donna On 05/12/2010 02:51 AM, R. Matthew Hutchison wrote: > Hi group, > > I am starting with Caret and have gone through most of the tutorials > using the data sets provided. The images are fantastic. > The part I seem to be missing is actually getting *my* activation maps > so that I can view them on the inflated surfaces. > I was wondering if anyone has a guide, steps, or hints in converting > the output files from FSL FEAT (registered to a standard atlas using > FSL FLIRT) to files viewable with Caret. > It seems this is not included in the tutorials. > > A search of the archive does not turn up any recent information on the > issue that I could find. > > I am actually using macaque data but I figure the steps should be the > same as with the human but using the F99 atlas. > Perhaps I am just missing something obvious? > > I understand that my data must be registered to the atlas space that I > wish to use in Caret. > But which FSL file should be used and what is the next step so that I > can view them? > If it is registered to the atlas then there should be no need to > segment the volumes again right? > > Thank you for any help (and patience for a novice), > > R.Matt Hutchison > > > -- > R. Matthew Hutchison, PhD. Candidate > Centre for Functional and Metabolic Mapping > Robarts Research Institute > Cuddy Wing - 9.4T Suite > P.O. Box 5015, 100 Perth Drive > London, Ontario, Canada N6A 5K8 > ------------------------------------------------------------------------ > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
