Hi, Here is the output after running the "find /home/kukwai.liu/Desktop/caret -name Human.sphere_6.73730.coord" command.
Regards Kwliu ________________________________________ From: [email protected] [[email protected]] on behalf of Donna Dierker [[email protected]] Sent: 05 August 2010 17:01 To: Caret, SureFit, and SuMS software users Subject: Re: [caret-users] Preborder.sh problem Hi Kwliu, All looks good until it gets to this point: + cp /home/kukwai.liu/Desktop/caret/bin_linux/data_files/standard_mesh_atlases/Human.PALS.LEFT/Human.sphere_6.73730.coord /home/kukwai.liu/Desktop/caret/bin_linux/data_files/standard_mesh_atlases/Human.PALS.LEFT/Human.sphere_6.LEFT_HEM.73730.topo . cp: cannot stat `/home/kukwai.liu/Desktop/caret/bin_linux/data_files/standard_mesh_atlases/Human.PALS.LEFT/Human.sphere_6.73730.coord': No such file or directory cp: cannot stat `/home/kukwai.liu/Desktop/caret/bin_linux/data_files/standard_mesh_atlases/Human.PALS.LEFT/Human.sphere_6.LEFT_HEM.73730.topo': No such file or directory This suggests that you have your CARET_DIR setting like so: CARET_DIR=/home/kukwai.liu/Desktop/caret This is where your Caret distribution should be installed. If you do have it installed there, then do this command: find /home/kukwai.liu/Desktop/caret -name Human.sphere_6.73730.coord ... and send me the output of that command. Donna On 08/05/2010 06:49 AM, Kuk Wai Liu wrote: > Hi, > > I'm running the PALS-B12 pipeline and i've run the > PALS_B12.LR/preborder.sh command and received the following output > with many errors. Could you please tell me what i may have done wrong? > > Regards > > Kwliu > ------------------------------------------------------------------------ > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
-------- freesurfer-Linux-centos4-stable-pub-v4.5.0 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /home/kukwai.liu/Desktop/freesurfer FSFAST_HOME /home/kukwai.liu/Desktop/freesurfer/fsfast FSF_OUTPUT_FORMAT nii SUBJECTS_DIR /home/kukwai.liu/Desktop/freesurfer/subjects MNI_DIR /home/kukwai.liu/Desktop/freesurfer/mni FSL_DIR /usr/local/fsl /home/kukwai.liu> find /home/kukwai.liu/Desktop/caret -name Human.sphere_6.73730.coord /home/kukwai.liu/Desktop/caret/data_files/standard_mesh_atlases/Human.PALS.LEFT/Human.sphere_6.73730.coord /home/kukwai.liu>
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