By GUI, use File: Save Data File: Cell File and change the reference
surface from the fiducial to the flat.
Or use this command line utility, specifying the flat coord and cut topo:
caret_command -surface-cell-unprojection
<coordinate-file-name>
<topology-file-name>
<input-cell-projection-file-name>
<output-cell-file-name>
Unproject the cell projections to the surface and save
the cell file.
On 08/19/2010 01:27 PM, Iman Janemi wrote:
> Dear Caret Users, Hello,
> I was wondering if there is any place where I can access a text file
> of the xyz coordinates of my cells on the flat map in caret. I know I
> can find the text file for the Fiducial surface under "cell Report"
> but it seems that to find the Flat map xyz I need to click view and
> then click on the cell on the primary view screen after which in the
> ID window the xyz coordinate is shown (so they must be stored some where).
>
>
> If not is there any way I can have some sort of transformation matrix
> from Fiducial to Flat map so I can extrapolate the flat map
> coordinates using the Fiducial text file in matlab ?
>
>
> Thank you kindly,
>
>
> Iman Janemi.
> ------------------------------------------------------------------------
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