Hi, I am using caret v5.615 under Mac OS X (10.6). Although the topic of foci mapping is covered in many tutorials I have still some problems. I followed the step-by-step description provided here: http://brainvis.wustl.edu/wiki/index.php/Caret:Operations/Foci
After entering two foci (coordinates from the MNI152 2 mm template) my Spreadsheet looks like this: CSVF-FILE,0,,,,,,,,,,,,,,,,,,,,,,,,, csvf-section-start,header,2,,,,,,,,,,,,,,,,,,,,,,,, tag,value,,,,,,,,,,,,,,,,,,,,,,,,, Caret-Version,5.615,,,,,,,,,,,,,,,,,,,,,,,,, Date,2011-01-26T17:45:55,,,,,,,,,,,,,,,,,,,,,,,,, comment,,,,,,,,,,,,,,,,,,,,,,,,,, encoding,COMMA_SEPARATED_VALUE_FILE,,,,,,,,,,,,,,,,,,,,,,,,, csvf-section-end,header,,,,,,,,,,,,,,,,,,,,,,,,, csvf-section-start,Cells,27,,,,,,,,,,,,,,,,,,,,,,,, Cell Number,X,Y,Z,Section,Name,Study Number,Geography,Area,Size,Statistic,Comment,Structure,Class Name,SuMS ID Number,SuMS Repeat Number,SuMS Parent Cell Base ID,SuMS Version Number,SuMS MSLID,Attribute ID,Study PubMed ID,Study Table Number,Study Table Subheader,Study Figure Number,Study Figure Panel,Study Page Reference Number,Study Page Reference Subheader 0,-53,3,39,-1,_test_,0,,,0,,,left,_class_,-1,-1,-1,-1,-1,-1,11150347,,,,,, 1,48,-52,14,-1,_test_,0,,,0,,,right,_class_,-1,-1,-1,-1,-1,-1,11150347,,,,,, csvf-section-end,Cells,,,,,,,,,,,,,,,,,,,,,,,,, csvf-section-start,Cell Study Info,10,,,,,,,,,,,,,,,,,,,,,,,, Study Number,Stereotaxic Space,Keywords,URL,Title,Authors,Citation,Comment,Partitioning Scheme Abbreviation,Partitioning Scheme Full Name,,,,,,,,,,,,,,,,, 0,FLIRT,,,_test_,,,,,,,,,,,,,,,,,,,,,, csvf-section-end,Cell Study Info,,,,,,,,,,,,,,,,,,,,,,,,, However after opening the Human.PC-CC.TEMPLATE_Foci-Projection_Assignment.spec and the above foci-file, caret first complains that there is no foci color file. If I try to select Layers Menu->Project Foci to PALS Atlas, I get the error message that the "foci do not have associated sterotaxic spaces". From my understanding I assigned the 'sterotaxic' space with "0,FLIRT,,,_test_,,,,,,,,,,,,,,,,,,,,,," in the foci-file? What am I missing here? Really appreciate your help. Thanks, Matthias _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
