Hey Everyone, Here is my process for uploading foci from an excel sheet, step by step:
Creation of my excel spreadsheet for coordinates: CSVF_FILE 0 csvf-secton-start header 2 Caret-Version 5.616 Date 2011-02-15T15:07:46 comment encoding COMMA_SEPARATED_VALUE_FILE csvf-section-end header csvf-section-start Cells 26 Cell Numbers start at 0, all x y z coordinates are typed in. Names do not have any spaces in any of them. Cells = 26, no columns have been deleted. Also Study PubMed numbers are included. csvf-section-end Cells File is saved as ATLCoordinates.foci as a Windows CSV file without appending and without quotations - this is being done on a mac. Color File: CSVF-FILE 0 csvf-section-start header 2 tag value Caret-Version 5.616 Date 2011-02-15T15:07:46 comment encoding COMMA_SEPARATED_VALUE_FILE csvf-section-end header csvf-section start Colors 8 Columns include: NAME Red Green Blue Alpha Point-Size Line-Size Symbol All cells are filled in with no spaces and the number matches the number of coordinates. csvf-section-end colors Saving - ATL-AreaColor.focicolor as windows comma separated with appending and no quotations. Both files saved- In Caret 5.616, Open Spec File - I'm using Human.PC-CC.SearchFoci_Tutorial_March09.spec Load Scenes I open up the PALS-B12 Inflated right and left (They are displayed in the viewing windows) Now - Open Data file, ATL-AreaColor.focicolor - color file I made - I don't copy to the current directory Next - Open Data file, ATLCoordinates.foci - Don't copy files to current directory Nothing showing up on brain yet- In Spec I go to foci - open color, Open ATL-AreaColor.focicolor - color file I made Next I open ATLCoordinates.foci I append both Nothing shows up, In the D/C menu I go to Layers- Check foci- Still nothing shows up. In the foci main window Show foci, show volume voci, show foci on Correct hemisphere Only are all checked. Still nothing on the brain. Does anyone have any ideas? Sorry for the lengthy email, I just thought it would be good to have a complete process out for those who have the same problem in the future. Thanks! On Wed, Feb 16, 2011 at 4:19 PM, David Van Essen <[email protected]> wrote: > Also, if you have not yet projected the foci, they will not be visible > unless a 'fiducial' surface is displayed in the main window. > > David VE > > On Feb 16, 2011, at 3:04 PM, Erin Reid wrote: > > David, > First check to make sure you have "Show Foci" checked in the D/C menu: Foci > Main page. If that is not the issue let us know. > > Erin > > On 2/16/11 2:04 PM, David McCoy wrote: > > Hey everyone, > > I'm doing a meta brain in caret 5.616 and am having some issues. I've > used caret before to import foci so I know how the typical spreadsheets work > etc. However, now when I attempt to load in my foci, it says it requires the > color file. So, I followed the tutorials I found online in loading in the > focicolor and foci file and I'm still not getting any foci on the meta > brain. Anyone have any tips? Thanks > > -- > David B. McCoy > Research Specialist - Olson Lab > Department of Psychology > Temple University - College of Liberal Arts > [email protected] > 215-204-1708 > > > Center for Cognitive Neuroscience > Department of Psychology > University of Pennsylvania > [email protected] > > > _______________________________________________ > caret-users mailing > [email protected]http://brainvis.wustl.edu/mailman/listinfo/caret-users > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > -- David B. McCoy Research Specialist - Olson Lab Department of Psychology Temple University - College of Liberal Arts [email protected] 215-204-1708 Center for Cognitive Neuroscience Department of Psychology University of Pennsylvania [email protected]
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